fix tests

stemangiola · Aug 29, 2023 · d0b66de · d0b66de
1 parent 22457ec
commit d0b66de
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/tests/testthat/test-bulk_methods.R b/tests/testthat/test-bulk_methods.R
@@ -661,8 +661,10 @@ test_that("DESeq2 differential trancript abundance - no object",{
     BiocManager::install("DESeq2", ask = FALSE)
   }
 
-	res_deseq2 =
-		test_deseq2_df |>
+  test_deseq2_df = DESeq2::DESeqDataSet(se_mini,design=~condition)
+
+  res_deseq2 =
+	  test_deseq2_df |> 
 		DESeq2::DESeq() |>
 		DESeq2::results()