update tests

stemangiola · Aug 29, 2023 · 22457ec · 22457ec
1 parent 318be24
commit 22457ec
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Showing 2 changed files with 6 additions and 16 deletions.
diff --git a/man/test_deseq2_df.Rd b/man/test_deseq2_df.Rd
diff --git a/tests/testthat/test-bulk_methods.R b/tests/testthat/test-bulk_methods.R
@@ -655,6 +655,12 @@ test_that("New method choice",{
 
 test_that("DESeq2 differential trancript abundance - no object",{
 
+  if (find.package("DESeq2", quiet = TRUE) |> length() |> equals(0)) {
+    if (!requireNamespace("BiocManager", quietly = TRUE))
+      install.packages("BiocManager", repos = "https://cloud.r-project.org")
+    BiocManager::install("DESeq2", ask = FALSE)
+  }
+
 	res_deseq2 =
 		test_deseq2_df |>
 		DESeq2::DESeq() |>