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Add documentation for biopax argument
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bgyori committed Jul 23, 2024
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10 changes: 10 additions & 0 deletions indra/sources/biopax/processor.py
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Expand Up @@ -40,6 +40,16 @@ class BiopaxProcessor(object):
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model : org.biopax.paxtools.model.Model
A BioPAX model object (java object)
use_conversion_level_evidence : Optional[bool]
If True, the evidence for each Statement is taken from the
conversion that the Statement was extracted from. If False,
the evidence is taken from the individual control that the
Statement was extracted from. Setting this toi True
could have unintended consequences because e.g., a
Phosphorylation could be extracted from a Conversion
that has multiple controls, and the evidence for the
Phosphorylation would generally not be specific
to the kinase in the statement. Default is False.
Attributes
----------
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