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@sorgerlab

Sorger Lab @ Harvard Medical School

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  1. indra indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

    Python 181 67

  2. rasmodel rasmodel Public

    RAS Executable Model (REM)

    Python 4 9

  3. CancerBrowser CancerBrowser Public

    HMS LINCS Cancer Browser

    JavaScript 5 3

Repositories

Showing 10 of 55 repositories
  • indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

    sorgerlab/indra’s past year of commit activity
    Python 181 BSD-2-Clause 67 33 6 Updated Nov 19, 2024
  • famplex Public Forked from johnbachman/famplex

    Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

    sorgerlab/famplex’s past year of commit activity
    Python 18 CC0-1.0 31 28 2 Updated Jul 10, 2024
  • bioagents Public

    Biological reasoning agents

    sorgerlab/bioagents’s past year of commit activity
    Python 5 BSD-2-Clause 15 7 2 Updated Apr 3, 2024
  • OMERO.forms Public

    Extension to OMERO.web to enhance metadata input and provide provenance

    sorgerlab/OMERO.forms’s past year of commit activity
    Python 7 AGPL-3.0 4 4 3 Updated Dec 5, 2023
  • indra_assembly_paper Public

    Automated assembly of molecular mechanisms at scale from text mining and curated databases

    sorgerlab/indra_assembly_paper’s past year of commit activity
    Jupyter Notebook 0 1 0 1 Updated Jan 23, 2023
  • pathwaymap.indra.bio Public

    pathwaymap.indra.bio website

    sorgerlab/pathwaymap.indra.bio’s past year of commit activity
    JavaScript 2 BSD-2-Clause 1 0 7 Updated May 25, 2022
  • indra_apps Public
    sorgerlab/indra_apps’s past year of commit activity
    Jupyter Notebook 1 8 0 0 Updated Apr 26, 2021
  • earm Public Forked from clopezx/earm

    Extrinsic Apoptosis Reaction Model

    sorgerlab/earm’s past year of commit activity
    Python 1 17 3 1 Updated Oct 28, 2020
  • indra_pathway_map Public Forked from pvtodorov/indra_pathway_map
    sorgerlab/indra_pathway_map’s past year of commit activity
    JavaScript 0 BSD-2-Clause 5 0 0 Updated Jun 17, 2020
  • cycif Public

    Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

    sorgerlab/cycif’s past year of commit activity
    MATLAB 9 MIT 4 0 0 Updated May 5, 2019
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