Spacedust Release 2-e56c505

At a glance: Spacedust is a modular toolkit for identification of conserved gene clusters among multiple genomes based on homology and conservation of gene neighborhood.

Spacedust requires a 64-bit system (check with uname -a | grep x86_64) with at least the SSE4.1 instruction set (check by executing cat /proc/cpuinfo | grep sse4_1 on Linux or sysctl -a | grep machdep.cpu.features | grep SSE4.1 on macOS) or an 64-bit ARM CPU (any Mac with Apple Silicon or aarch64 Linux system).

Changes since Release 1-babc6f8

• Integration of ProstT5 with --search-mode 2
• Set DB creation: createsetdb works with passing a directory with regex fileter, a list of .tsv paths, or a built MMseqs/Foldseek(ProstT5) database with createdb
• Clustered clustersearch clusterdb pipeline now works correctly for Foldseek and MMseqs2 search modes
• Foldseek installation is no longer needed for Docker packages, and for binary downloads made explicit with --foldseek-path parameter

Spacedust Release 1-babc6f8

At a glance: Spacedust is a modular toolkit for identification of conserved gene clusters among multiple genomes based on homology and conservation of gene neighborhood. Spacedust requires a 64-bit system (check with uname -a | grep x86_64) with at least the SSE4.1 instruction set (check by executing cat /proc/cpuinfo | grep sse4_1 on Linux or sysctl -a | grep machdep.cpu.features | grep SSE4.1 on MacOS).