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@sandberg-lab

Sandberg lab

Code developed by members of the sandberg lab at Karolinska Institutet, Sweden.

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  1. Smart-seq3 Smart-seq3 Public

    Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).

    Python 49 12

  2. txburst txburst Public

    Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).

    Jupyter Notebook 36 13

  3. Spreading-Correction Spreading-Correction Public

    Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

    Jupyter Notebook 15 4

  4. dataprivacy dataprivacy Public

    Python 14 4

  5. NASC-seq NASC-seq Public

    Code and analysis pipeline for NASC-seq.

    Python 11 2

  6. lncRNAs_bursting lncRNAs_bursting Public

    Count tables, R Code and Analyses for Johnsson et al., 2021

    R 5 1

Repositories

Showing 10 of 11 repositories
  • NASC-seq2 Public
    sandberg-lab/NASC-seq2’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 26, 2024
  • dataprivacy Public
    sandberg-lab/dataprivacy’s past year of commit activity
    Python 14 GPL-3.0 4 5 1 Updated Apr 29, 2024
  • txburst Public

    Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).

    sandberg-lab/txburst’s past year of commit activity
    Jupyter Notebook 36 13 8 0 Updated Apr 22, 2024
  • compound-screen Public
    sandberg-lab/compound-screen’s past year of commit activity
    Python 0 1 0 0 Updated Jan 24, 2024
  • NASC-seq Public

    Code and analysis pipeline for NASC-seq.

    sandberg-lab/NASC-seq’s past year of commit activity
    Python 11 GPL-3.0 2 4 1 Updated Jun 14, 2022
  • molecularSpikes Public
    sandberg-lab/molecularSpikes’s past year of commit activity
    R 0 0 0 0 Updated May 23, 2022
  • lncRNAs_bursting Public

    Count tables, R Code and Analyses for Johnsson et al., 2021

    sandberg-lab/lncRNAs_bursting’s past year of commit activity
    R 5 GPL-3.0 1 1 0 Updated Nov 15, 2021
  • Smart-seq3 Public

    Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).

    sandberg-lab/Smart-seq3’s past year of commit activity
    Python 49 GPL-3.0 12 3 0 Updated Oct 8, 2021
  • Smart-seq3xpress Public

    Files related to Smart-seq3xpress

    sandberg-lab/Smart-seq3xpress’s past year of commit activity
    1 1 0 0 Updated Jul 12, 2021
  • aRME_and_bursting Public

    Code for analysis described in the article "Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance" (Larsson et. al 2021).

    sandberg-lab/aRME_and_bursting’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Mar 31, 2021
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