closes #4549; closes #4441; closes #4621 (#4622)

* closes #4549; closes #4441; closes #4621 * closes #4549; closes #4441; closes #4621
pombase · Oct 14, 2024 · edf7db1 · edf7db1
1 parent 89502de
commit edf7db1
Showing 1 changed file with 44 additions and 0 deletions.
diff --git a/src/ontology/fypo-edit.owl b/src/ontology/fypo-edit.owl
@@ -8784,6 +8784,10 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008306>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008307>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008308>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008309>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008310>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008311>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008313>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008314>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009002>))
@@ -57547,6 +57551,7 @@ AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_000
 AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0003136> "2014-02-26T10:31:56Z")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0003136> "excess plasma membrane present during vegetative growth")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0070250") Annotation(oboInOwl:hasDbXref "PomBase:al") Annotation(oboInOwl:hasDbXref "PomBase:vw") oboInOwl:hasNarrowSynonym <http://purl.obolibrary.org/obo/FYPO_0003136> "excess mating projection membrane present")
+AnnotationAssertion(oboInOwl:hasNarrowSynonym <http://purl.obolibrary.org/obo/FYPO_0003136> "increased invagination of the plasma membrane")
 AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0003136> "fission_yeast_phenotype")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0003136> "excess plasma membrane present during mitotic cell cycle")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19627505") Annotation(oboInOwl:hasDbXref "PomBase:vw") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0003136> "internal membrane bubbles present")
@@ -124130,6 +124135,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExa
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0007569> "abnormal septation initiation network signaling during vegetative growth")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0007569> "abnormal septation initiation network signalling")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0031028") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0007569> "abnormal septation initiation signaling")
+AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0007569> "septation initiation defective")
 AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0007569> "fission_yeast_phenotype")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0007569> "abnormal septation initiation network signaling during mitotic cell cycle")
 AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0007569> "FYPO:0007569")
@@ -132689,6 +132695,44 @@ AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYP
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008309> "increased cell surface area at division"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008309> <http://purl.obolibrary.org/obo/FYPO_0002377>)
 
+# Class: <http://purl.obolibrary.org/obo/FYPO_0008310> (unstable meiotic telomere clustering)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34067465") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008310> "A cell phenotype in which meiotic telomere clustering is unstable, leading to transient unclustering of telomeres.")
+AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008310> "vw")
+AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008310> "2024-10-14T09:03:38Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008310> "fission_yeast_phenotype")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008310> "unstable meiotic telomere clustering"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008310> <http://purl.obolibrary.org/obo/FYPO_0000172>)
+
+# Class: <http://purl.obolibrary.org/obo/FYPO_0008311> (normal protein localization to meiotic spindle pole body during prophase I)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008311> "A cell phenotype in which the localization of a protein to the meiotic spindle pole body during prophase of the first meiotic nuclear division is normal (i.e. indistinguishable from wild type).")
+AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008311> "vw")
+AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008311> "2024-10-14T09:17:47Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008311> "fission_yeast_phenotype")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008311> "normal protein localization to meiotic spindle pole body during prophase I"@en)
+EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008311> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0007128>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_1902441>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008311> <http://purl.obolibrary.org/obo/FYPO_0004764>)
+
+# Class: <http://purl.obolibrary.org/obo/FYPO_0008313> (normal meiotic spindle pole body insertion into nuclear envelope in meiosis I)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008313> "A cellular process phenotype in which insertion of the spindle pole body into the nuclear envelope during the first meiotic nuclear division is normal.")
+AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008313> "vw")
+AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008313> "2024-10-14T09:43:14Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008313> "fission_yeast_phenotype")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008313> "normal meiotic spindle pole body insertion into nuclear envelope in meiosis I"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008313> <http://purl.obolibrary.org/obo/FYPO_0007078>)
+
+# Class: <http://purl.obolibrary.org/obo/FYPO_0008314> (normal initial meiotic spindle pole body separation in meiosis I)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008314> "A cellular process phenotype in which the initial release of duplicated spindle pole bodies that occurs as part of the first meiotic nuclear division, is normal (i.e. indistinguishable from wild type).")
+AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008314> "vw")
+AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008314> "2024-10-14T09:45:00Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008314> "fission_yeast_phenotype")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008314> "normal initial meiotic spindle pole body separation in meiosis I"@en)
+EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008314> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0007127>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0140456>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008314> <http://purl.obolibrary.org/obo/FYPO_0007078>)
+
 # Class: <http://purl.obolibrary.org/obo/FYPO_0009000> (decreased rate of cytoplasmic microtubule polymerization during mitotic interphase)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36633091") Annotation(oboInOwl:hasDbXref "PomBase:mlr") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009000> "A microtubule cytoskeleton organization phenotype observed during mitotic interphase in which cytoplasmic microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal.")