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closes #4618; closes #4617; closes #4616; closes #4615; closes #4614; c…
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…loses #4607 (#4620)
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@ValWood
ValWood authored Oct 14, 2024
1 parent 7f79d33 commit 89502de
Showing 1 changed file with 116 additions and 7 deletions.
123 changes: 116 additions & 7 deletions src/ontology/fypo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -8773,6 +8773,17 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008295>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008296>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008297>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008298>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008299>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008300>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008301>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008302>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008303>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008304>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008305>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008306>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008307>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008308>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008309>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009000>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009001>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009002>))
Expand Down Expand Up @@ -13391,7 +13402,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") <http://purl.ob
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0000188> "midori")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0000188> "2011-04-13T03:41:10Z")
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0000188> "fission_yeast_phenotype")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0000188> "abnormal DNA repair during mitotic cell cycle")
AnnotationAssertion(oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0000188> "abnormal DNA repair during mitotic cell cycle")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0000188> "FYPO:0000188")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0000188> "abnormal DNA repair during vegetative growth")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0000188> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0006281>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
Expand Down Expand Up @@ -89381,15 +89392,14 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0005269> "de
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0005269> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000911> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000002> <http://purl.obolibrary.org/obo/GO_0070301>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0004672>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0005269> <http://purl.obolibrary.org/obo/FYPO_0001382>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0005270> (decreased protein kinase activity during cellular response to salt stress)
# Class: <http://purl.obolibrary.org/obo/FYPO_0005270> (decreased protein kinase activity during cellular response to osmotic stress)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0005270> "A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to salt stress.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0005270> "A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to osmotic stress.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0005270> "midori")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0005270> "2016-02-08T14:53:13Z")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0005270> "reduced protein kinase activity during cellular response to salt stress")
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0005270> "fission_yeast_phenotype")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0005270> "FYPO:0005270")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0005270> "decreased protein kinase activity during cellular response to salt stress")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0005270> "decreased protein kinase activity during cellular response to osmotic stress")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0005270> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000911> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000002> <http://purl.obolibrary.org/obo/GO_0071472>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0004672>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0005270> <http://purl.obolibrary.org/obo/FYPO_0001382>)

Expand Down Expand Up @@ -131023,13 +131033,13 @@ AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008122> "increased mitochondrial fusion"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008122> <http://purl.obolibrary.org/obo/FYPO_0008089>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008123> (loss of viability in stationary phase upon phopshate starvation)
# Class: <http://purl.obolibrary.org/obo/FYPO_0008123> (loss of viability in stationary phase upon phosphate starvation)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36794724") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008123> "A cell population phenotype in which a smaller than normal proportion of cells in the population remains viable after entering stationary phase, when cells the population are subject to phosphate starvation.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008123> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008123> "2023-09-05T16:57:32Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0008123> "decreased chronological lifespan of phosphate-starved cells")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008123> "loss of viability in stationary phase upon phopshate starvation"@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008123> "loss of viability in stationary phase upon phosphate starvation")
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008123> <http://purl.obolibrary.org/obo/FYPO_0000245>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008124> (increased nuclear envelope SPB fenestra size)
Expand Down Expand Up @@ -132580,6 +132590,105 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008298> "
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008298> "ergosta-5,7-dienol level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008298> <http://purl.obolibrary.org/obo/FYPO_0001330>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008299> (decreased rate of protein exchange at plasma membrane)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008299> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of protein exchange between the plasma membrane and the cytosol is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008299> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008299> "2024-10-07T09:51:54Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008299> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008299> "decreased rate of protein exchange at plasma membrane"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008299> <http://purl.obolibrary.org/obo/FYPO_0005544>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008300> (abnormal punctate nuclear protein localization during meiotic prophase I)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008300> "A cell phenotype observed during prophase of the first division of the meiotic cell cycle in which a protein that is normally localized to discrete regions in the nucleus, visible as foci or dots by microscopy, is abnormally localized.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008300> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008300> "2024-10-07T10:00:27Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008300> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008300> "abnormal punctate nuclear protein localization during meiotic prophase I"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008300> <http://purl.obolibrary.org/obo/FYPO_0003549>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008301> (decreased punctate nuclear protein localization during meiotic prophase I)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008301> "A cell phenotype observed during prophase of the first division of the meiotic cell cycle in which a protein that is normally localized to discrete regions in the nucleus, visible as foci or dots by microscopy, is abnormally localized such that fewer dots are observed than in normal (wild type) cells.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008301> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008301> "2024-10-07T10:02:04Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008301> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008301> "decreased punctate nuclear protein localization during meiotic prophase I"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008301> <http://purl.obolibrary.org/obo/FYPO_0008300>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008302> (abolished punctate nuclear protein localization during meiotic prophase I)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008302> "A cell phenotype observed during prophase of the first division of the meiotic cell cycle in which the localization of a protein to discrete regions in the nucleus, visible as foci or dots by microscopy, is abolished.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008302> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008302> "2024-10-07T10:03:21Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008302> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008302> "abolished punctate nuclear protein localization during meiotic prophase I"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008302> <http://purl.obolibrary.org/obo/FYPO_0008300>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008303> (normal number of Rad51 foci during meiotic prophase I)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008303> "A cell phenotype observed during prophase of the first division of the meiotic cell cycle in which the number of sites at which the protein Rad51 accumulates is normal (i.e. indistinguishable from wild type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008303> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008303> "2024-10-07T10:06:50Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008303> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008303> "normal number of Rad51 foci during meiotic prophase I"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008303> <http://purl.obolibrary.org/obo/FYPO_0003790>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008304> (abolished protein localization to nucleus during meiosis)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008304> "A cell phenotype in which the localization of a protein to the nucleus during one or both meiotic nuclear divisions is abolished.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008304> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008304> "2024-10-07T10:12:16Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008304> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008304> "abolished protein localization to nucleus during meiosis"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008304> <http://purl.obolibrary.org/obo/FYPO_0002957>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008305> (increased inter-sister chromatid meiotic recombination)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008305> "A cellular process phenotype in which the occurrence of meiotic recombination between alleles on different sister chromatids (inter-sister recombination) is increased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008305> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008305> "2024-10-07T10:17:50Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008305> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008305> "increased inter-sister chromatid meiotic recombination"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008305> <http://purl.obolibrary.org/obo/FYPO_0000487>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008306> (increased mitotic DNA replication initiation from late origin)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008306> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of DNA replication initiation is higher than normal at layte origins.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008306> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008306> "2024-10-07T10:25:43Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008306> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008306> "increased mitotic DNA replication initiation from late origin"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008306> <http://purl.obolibrary.org/obo/FYPO_0001344>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008307> (decreased cell diameter at division)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008307> "A cell phenotype in which a cell divides with a smaller diameter than normal (i.e. compared to wild-type cells under the same conditions).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008307> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008307> "2024-10-07T10:31:53Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008307> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008307> "decreased cell diameter at division"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008307> <http://purl.obolibrary.org/obo/FYPO_0001877>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008308> (increased cell volume at division)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008308> "A cell phenotype in which a cell divides with a greater volume than normal (i.e. compared to wild-type cells under the same conditions).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008308> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008308> "2024-10-07T10:39:11Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008308> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008308> "increased cell volume at division"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008308> <http://purl.obolibrary.org/obo/FYPO_0002377>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008309> (increased cell surface area at division)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008309> "A cell phenotype in which a cell divides with a greater surface area than normal (i.e. compared to wild-type cells under the same conditions).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008309> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008309> "2024-10-07T10:42:26Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008309> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008309> "increased cell surface area at division"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008309> <http://purl.obolibrary.org/obo/FYPO_0002377>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009000> (decreased rate of cytoplasmic microtubule polymerization during mitotic interphase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36633091") Annotation(oboInOwl:hasDbXref "PomBase:mlr") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009000> "A microtubule cytoskeleton organization phenotype observed during mitotic interphase in which cytoplasmic microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal.")
Expand Down

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