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Merge pull request #93 from oubino/new_working
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fix up readme
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oubino authored Feb 8, 2024
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Expand Up @@ -9,9 +9,11 @@ This includes the following functionality:
#. :ref:`annotate` : Generating histograms from the SMLM data and manually annotating these histograms to extract relevant localisations
#. :ref:`get-markers` : Labelling histogram with seeds for watershed algorithm
#. Segmentation:

#. :ref:`classic-segmentation` : Use classic method to segment histograms to extract relevant localisations
#. :ref:`cellpose-segmentation` : Use Cellpose method to segment histograms to extract relevant localisations
#. :ref:`ilastik-segmentation` : Use Ilastik method to segment histograms to extract relevant localisations

#. :ref:`membrane-performance` : Performance metrics calculation based on the localisations (not the histograms!)

.. note::
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