Repositories list

• qubalab

  Public
  Lab for quantitative bioimage analysis experiments in Python

  Python

  •

  Apache License 2.0

  •3•8•0•0•Updated Nov 27, 2024Nov 27, 2024

• qupath

  Public
  QuPath - Open-source bioimage analysis for research

  groovyopencvmachine-learning+ 13imagejjavafximage-processinghistologycell-segmentationbioimage-informaticsdigital-pathology+ 6

  Java

  •

  GNU General Public License v3.0

  •282•1.1k•41•4•Updated Nov 27, 2024Nov 27, 2024

• qupath-extension-instanseg

  Public
  The official QuPath extension for InstanSeg

  Java

  •

  Apache License 2.0

  •5•10•4•2•Updated Nov 26, 2024Nov 26, 2024

• i2k-qupath-for-python-programmers

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •1•6•0•0•Updated Nov 25, 2024Nov 25, 2024

• qupath-extension-training

  Public
  A QuPath extension to help with learning the software

  Java

  •

  Apache License 2.0

  •2•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• qupath-extension-omero

  Public
  QuPath extension to work with images through OMERO's APIs

  Java

  •

  Apache License 2.0

  •1•4•26•1•Updated Nov 15, 2024Nov 15, 2024

• c-blosc-jars

  Public
  JAR files for the c-blosc native library.

  1•1•0•0•Updated Nov 12, 2024Nov 12, 2024

• qubalab-docs

  Public
  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• i2k2024

  Public
  Groovy

  •2•2•0•1•Updated Oct 29, 2024Oct 29, 2024

• qupath.github.io

  Public
  GitHub pages site

  SCSS

  •

  MIT License

  •4•2•0•1•Updated Oct 28, 2024Oct 28, 2024

• qupath-extension-py4j

  Public
  A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• qupath-docs

  Public
  QuPath documentation

  Python

  •22•17•9•2•Updated Oct 18, 2024Oct 18, 2024

• qupath-gradle-scripting-project

  Public template
  Groovy

  •2•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• qupath-extension-stardist

  Public
  QuPath extension to run StarDist nucleus detection

  Java

  •

  Apache License 2.0

  •6•35•3•1•Updated Sep 12, 2024Sep 12, 2024

• qupath-extension-djl

  Public
  A QuPath extension for working with Deep Java Library (https://djl.ai)

  Java

  •

  Apache License 2.0

  •4•6•3•0•Updated Sep 11, 2024Sep 11, 2024

• javadoc-viewer

  Public
  A simple JavaFX Javadoc viewer

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• log-viewer

  Public
  Java

  •

  Apache License 2.0

  •2•5•3•0•Updated Sep 10, 2024Sep 10, 2024

• qupath-fxtras

  Public
  Reusable JavaFX tools for QuPath (and beyond)

  Java

  •

  Apache License 2.0

  •4•2•0•0•Updated Sep 10, 2024Sep 10, 2024

• qupath-extension-wsinfer

  Public
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

  Java

  •

  Apache License 2.0

  •7•22•5•0•Updated Aug 29, 2024Aug 29, 2024

• qupath-extension-align

  Public
  QuPath extension to interactively align images

  Java

  •

  GNU General Public License v3.0

  •7•20•1•3•Updated Aug 20, 2024Aug 20, 2024

• qupath-extension-template

  Public template
  Template to help create a new QuPath extension

  Java

  •7•15•0•1•Updated Aug 16, 2024Aug 16, 2024

• openslide-jars

  Public
  Ruby

  •2•0•0•0•Updated Jul 5, 2024Jul 5, 2024

• qupath-extension-jpen

  Public
  QuPath extension using JPen for graphics tablet input

  Java

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated Jul 3, 2024Jul 3, 2024

• qupath-extension-omero-web

  Public
  QuPath extension to work with images through OMERO's web API

  Java

  •

  GNU General Public License v3.0

  •12•8•9•0•Updated May 31, 2024May 31, 2024

• qupath-extension-bioimageio

  Public
  A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

  Java

  •

  Apache License 2.0

  •3•4•1•0•Updated Dec 1, 2023Dec 1, 2023

• qupath-extension-tensorflow

  Public archive
  Use TensorFlow from QuPath

  Java

  •

  GNU General Public License v3.0

  •5•8•0•0•Updated Nov 1, 2023Nov 1, 2023

• qupath-bioimage-io

  Public
  QuPath resources for Bioimage.IO

  3•1•0•1•Updated Sep 14, 2023Sep 14, 2023

• .github

  Public
  Public README for QuPath organization

  0•0•0•0•Updated Apr 23, 2023Apr 23, 2023

• qupath-bioimageio-spec

  Public
  Support for parsing the BioImage Model Zoo spec in Java

  Java

  •

  MIT License

  •2•0•0•1•Updated Nov 30, 2022Nov 30, 2022

• embo

  Public
  QuPath workshop as part of the EMBO Advanced Methods in Bioimage Analysis course 2021

  HTML

  •0•1•0•0•Updated Aug 30, 2022Aug 30, 2022