This repo contains the QuPath extension that adds support for the WSInfer Model Zoo.
Together, QuPath & WSInfer aim to make deep learning-based patch classification easy and interactive for pathology images.
To find out more, check out our preprint on arXiv:
If you use this extension, please cite both the WSInfer preprint and the QuPath paper!
Download the latest version of the extension from the releases page.
Then drag & drop the downloaded .jar file onto the main QuPath window to install it.
See the QuPath docs for more info about installing & updating extensions.
The WSInfer extension adds a new menu item to QuPath's Extensions menu, which can be used to open a WSInfer dialog.
The dialog tries to guide you through the main steps, from top to bottom. For a step-by-step guide,see ReadTheDocs.
And if things don't go to plan or you want to discuss more, please post your questions on the Scientific Community Image Forum (image.sc) - and tag both wsinfer and qupath so we notice.