Repositories list

• Access-to-Data-and-Compute-using-Service-Workbench

  Public
  Repository for Service Workbench example notebooks

  Jupyter Notebook

  •

  Apache License 2.0

  •2•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• cellpop

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•11•2•Updated Feb 4, 2025Feb 4, 2025

• biodata_catalyst_stigmatizing_variables

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•2•Updated Feb 4, 2025Feb 4, 2025

• PIC-SURE-Frontend

  Public
  A frontend for the PIC-SURE API

  TypeScript

  •

  Apache License 2.0

  •0•1•0•9•Updated Feb 4, 2025Feb 4, 2025

• i2b2v2-webclient

  Public
  JavaScript

  •4•2•1•1•Updated Feb 4, 2025Feb 4, 2025

• pic-sure-hpds

  Public
  Java

  •

  Apache License 2.0

  •6•3•0•6•Updated Feb 4, 2025Feb 4, 2025

• pic-sure-bdc-release-control

  Public
  Apache License 2.0

  •8•1•0•0•Updated Feb 4, 2025Feb 4, 2025

• pic-sure-all-in-one

  Public
  Shell

  •

  Apache License 2.0

  •12•4•0•2•Updated Feb 4, 2025Feb 4, 2025

• pic-sure-gic-institution-release-control

  Public
  Apache License 2.0

  •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• PIC-SURE-Migrations

  Public
  Database migrations for the PIC-SURE All-in-One.

  Apache License 2.0

  •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• picsure-dictionary-etl

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• ETL-MissionControl-dbgap-submodule

  Public
  ETL-MissionControl-dbgap-submodule

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• avillachlab-jenkins

  Public
  HCL

  •

  Apache License 2.0

  •6•5•0•0•Updated Feb 3, 2025Feb 3, 2025

• pic-sure-auth-microapp

  Public
  Java

  •

  Apache License 2.0

  •5•4•0•1•Updated Feb 3, 2025Feb 3, 2025

• hypatio-app

  Public
  Python

  •0•4•0•9•Updated Feb 3, 2025Feb 3, 2025

• dbmi-fileservice

  Public
  Python

  •0•2•0•5•Updated Feb 3, 2025Feb 3, 2025

• fhirquestionnaire

  Public
  HTML

  •0•2•0•5•Updated Feb 3, 2025Feb 3, 2025

• dbmisvc-starter

  Public
  Python

  •0•1•0•4•Updated Feb 3, 2025Feb 3, 2025

• actions

  Public
  0•0•0•44•Updated Feb 3, 2025Feb 3, 2025

• viv

  Public
  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  imagingome-tiffopenmicroscopy+ 4gehlenborglabzarrhubmapviv

  JavaScript

  •

  MIT License

  •47•294•45•11•Updated Feb 1, 2025Feb 1, 2025

• pic-sure-public-datasets

  Public
  Public datasets available for PIC-SURE

  Apache License 2.0

  •0•0•0•0•Updated Feb 1, 2025Feb 1, 2025

• vizarr

  Public
  A minimal Zarr image viewer based on Viv.

  jupyter-notebooksgehlenborglabzarr+ 2vivimjoy

  TypeScript

  •

  MIT License

  •18•134•19•11•Updated Feb 1, 2025Feb 1, 2025

• PIC-SURE-Metrics

  Public
  A Spring Boot PIC-SURE resource for logging user or service interactions for required metrics.

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• pic-sure

  Public
  PIC-SURE API

  Java

  •

  Apache License 2.0

  •3•5•0•6•Updated Jan 31, 2025Jan 31, 2025

• pic-sure-metadata-curation

  Public
  Parse and generate variable-level data to be exposed through the search interface.

  SAS

  •

  Apache License 2.0

  •2•2•0•0•Updated Jan 31, 2025Jan 31, 2025

• pic-sure-frontend-harness

  Public
  Shell

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• gehlenborglab-website

  Public
  Code for Gehlenborg Lab website.

  websitegehlenborglabhidivelab

  TypeScript

  •

  MIT License

  •38•8•21•22•Updated Jan 31, 2025Jan 31, 2025

• picsure-dictionary

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• chromoscope

  Public
  Interactive multiscale visualization for structural variation in human genomes

  TypeScript

  •

  MIT License

  •7•67•34•2•Updated Jan 30, 2025Jan 30, 2025

• pic-sure-bdc-infrastructure

  Public
  HCL

  •

  Apache License 2.0

  •1•5•0•2•Updated Jan 30, 2025Jan 30, 2025