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@WesterdijkInstitute Westerdijk Fungal Biodiversity Institute

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    11 repositories

    • BUSCO-fungal-phylogenomics

      Public
      Scripts to make a phylogenomic analysis using BUSCO
      Python
      •0•0•1•0•Updated Oct 6, 2024Oct 6, 2024

    • HighGene

      Public
      Highlight gene content variations
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • dAImos

      Public
      A deep learning approach for the identification of microsatellites in genome assemblies
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 10, 2024Jul 10, 2024

    • TeloVision

      Public
      Determine presence of telomeres and visualise genome assembly scaffolds.
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Apr 19, 2024Apr 19, 2024

    • ArboPhyl

      Public
      BUSCO based phylogenetics pipeline
      Python
      •
      MIT License
      •0•3•0•0•Updated Mar 22, 2024Mar 22, 2024

    • dnabarcoder

      Public
      dnabarcoder: a tool for eDNA identification
      Python
      •
      Apache License 2.0
      •5•1•0•0•Updated Jan 29, 2024Jan 29, 2024

    • SNPanalysis

      Public
      This pipeline is to generate a VCF file for a set of genomes, compared with a reference genome, developed by Duong Vu.
      Python
      •
      Apache License 2.0
      •2•1•0•0•Updated Aug 15, 2023Aug 15, 2023

    • FNP_aux_scripts

      Public
      Small scripts to help with fungal biosynthetic gene cluster mining
      Python
      •
      MIT License
      •3•5•0•0•Updated Nov 30, 2022Nov 30, 2022

    • BGClib

      Public
      BGC Toolkit and BGClib: tools for handling protein domains from GenBank files, mainly for biosynthetic gene cluster analysis
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 30, 2022May 30, 2022

    • MycoCosm_genome_downloader

      Public
      Tool to download fungal genomes (fasta + gff) files from JGI's MycoCosm
      Python
      •
      GNU Affero General Public License v3.0
      •1•1•0•0•Updated Mar 18, 2022Mar 18, 2022

    • fungiclassifiers

      Public
      fungiclassifiers: a collection of fungal classifiers using DNA barcodes
      Python
      •
      Apache License 2.0
      •5•0•0•0•Updated Dec 3, 2021Dec 3, 2021