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@WesterdijkInstitute

Westerdijk Fungal Biodiversity Institute

The Westerdijk Institute (WI)'s GitHub is a collection of various tools and pipelines developed by the scientific staff and students working at WI.

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  1. ArboPhyl ArboPhyl Public

    BUSCO based phylogenetics pipeline

    Python 6

  2. FNP_aux_scripts FNP_aux_scripts Public

    Small scripts to help with fungal biosynthetic gene cluster mining

    Python 5 3

  3. MycoCosm_genome_downloader MycoCosm_genome_downloader Public

    Tool to download fungal genomes (fasta + gff) files from JGI's MycoCosm

    Python 3

  4. TeloVision TeloVision Public

    Determine presence of telomeres and visualise genome assembly scaffolds.

    Python 2

  5. BUSCO-fungal-phylogenomics BUSCO-fungal-phylogenomics Public

    Scripts to make a phylogenomic analysis using BUSCO

    Python 1

  6. SNPanalysis SNPanalysis Public

    Forked from vuthuyduong/SNPanalysis

    This pipeline is to generate a VCF file for a set of genomes, compared with a reference genome, developed by Duong Vu.

    Python 1

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