Repositories list

• PTMsToPathways

  Public
  A package for mass spec data processing

  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Aug 6, 2025Aug 6, 2025

• FindViralStrains

  Public
  A pipeline to sift out viral strains from data sets using MFD

  Python

  •0•1•0•0•Updated Aug 2, 2025Aug 2, 2025

• flowpaths

  Public
  A Python package to quickly decompose weighted graphs into weights paths, under various models.

  Python

  •

  MIT License

  •2•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• FmAssemblyGraph

  Public
  Generates an assembly graph from an input fastq file using an fm-index to generate De Bruijn graph with edges containing weights and kmer labels.

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

• Graph-Loop

  Public
  Continually pruning a graph to analyze its structure

  Rust

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 11, 2025Apr 11, 2025

• FVS-Apptainer

  Public
  Find Viral Stains inside of an apptainer container

  GNU General Public License v3.0

  •1•0•0•2•Updated Feb 4, 2025Feb 4, 2025

• AWRY

  Public
  Lightning-fast FM-Index library, for the Rust ecosystem.

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •3•6•3•0•Updated Jan 14, 2025Jan 14, 2025

• cuttlefish

  Public
  Building the compacted de Bruijn graph efficiently from references or reads, with support for kmer counting along graph edges.

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •11•0•0•0•Updated Aug 10, 2024Aug 10, 2024