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1. AWRY AWRY Public

   Lightning-fast FM-Index library, for the Rust ecosystem.

   Rust 6 2

2. FindViralStrains FindViralStrains Public

   A pipeline to sift out viral strains from data sets using MFD

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3. cuttlefish cuttlefish Public

   Forked from COMBINE-lab/cuttlefish

   Building the compacted de Bruijn graph efficiently from references or reads, with support for kmer counting along graph edges.

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4. FmAssemblyGraph FmAssemblyGraph Public

   Generates an assembly graph from an input fastq file using an fm-index to generate De Bruijn graph with edges containing weights and kmer labels.

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5. FVS-Apptainer FVS-Apptainer Public

   Find Viral Stains inside of an apptainer container