Repositories list

• RoboCOP

  Public
  Jupyter Notebook

  •2•4•0•0•Updated Dec 22, 2024Dec 22, 2024

• TOP

  Public
  R package to predict TF occupancy using DNase-seq or ATAC-seq data

  R

  •

  Other

  •1•1•0•0•Updated Jul 27, 2023Jul 27, 2023

• TOP-paper-resources

  Public
  TOP paper resources

  R

  •

  MIT License

  •0•0•0•0•Updated Aug 30, 2022Aug 30, 2022

• cadmium-paper

  Public
  Scripts for processing, analyzing, and visualizing MNase-seq, RNA-seq cadmium perturbation time course

  Python

  •0•2•0•0•Updated Apr 18, 2021Apr 18, 2021

• COMPETE

  Public
  Competitive Occupancy: Multi-factor Profile Evaluation of a Thermodynamic Ensemble

  C

  •0•0•0•0•Updated Jul 14, 2017Jul 14, 2017

• NucID

  Public
  A Python package for identifying nucleosomes using single-end DNase-seq data

  Jupyter Notebook

  •0•5•0•0•Updated Aug 31, 2016Aug 31, 2016