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HarteminkLab

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  1. NucID NucID Public

    A Python package for identifying nucleosomes using single-end DNase-seq data

    Jupyter Notebook 5

  2. RoboCOP RoboCOP Public

    Jupyter Notebook 4 2

  3. cadmium-paper cadmium-paper Public

    Scripts for processing, analyzing, and visualizing MNase-seq, RNA-seq cadmium perturbation time course

    Python 2

  4. TOP TOP Public

    R package to predict TF occupancy using DNase-seq or ATAC-seq data

    R 1 1

  5. COMPETE COMPETE Public

    Competitive Occupancy: Multi-factor Profile Evaluation of a Thermodynamic Ensemble

    C

  6. TOP-paper-resources TOP-paper-resources Public

    TOP paper resources

    R

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Showing 6 of 6 repositories
  • RoboCOP Public
    HarteminkLab/RoboCOP’s past year of commit activity
    Jupyter Notebook 4 2 0 0 Updated Dec 22, 2024
  • TOP Public

    R package to predict TF occupancy using DNase-seq or ATAC-seq data

    HarteminkLab/TOP’s past year of commit activity
    R 1 1 0 0 Updated Jul 27, 2023
  • TOP-paper-resources Public

    TOP paper resources

    HarteminkLab/TOP-paper-resources’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 30, 2022
  • cadmium-paper Public

    Scripts for processing, analyzing, and visualizing MNase-seq, RNA-seq cadmium perturbation time course

    HarteminkLab/cadmium-paper’s past year of commit activity
    Python 2 0 0 0 Updated Apr 18, 2021
  • COMPETE Public

    Competitive Occupancy: Multi-factor Profile Evaluation of a Thermodynamic Ensemble

    HarteminkLab/COMPETE’s past year of commit activity
    C 0 0 0 0 Updated Jul 14, 2017
  • NucID Public

    A Python package for identifying nucleosomes using single-end DNase-seq data

    HarteminkLab/NucID’s past year of commit activity
    Jupyter Notebook 5 0 0 0 Updated Aug 31, 2016

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