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    597 repositories

    • trm-calculator

      Public
      TRM R Shiny app repo
      R
      •
      MIT License
      •0•1•6•2•Updated Feb 1, 2025Feb 1, 2025

    • VISCtemplates

      Public
      Tools for writing reproducible reports at VISC
      visc
      R
      •
      Other
      •2•6•36•5•Updated Jan 31, 2025Jan 31, 2025

    • itn-dashboard

      Public
      ITN Dashboard for data generated from metricminer
      dasl
      R
      •0•0•5•1•Updated Jan 31, 2025Jan 31, 2025

    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•5•0•Updated Jan 31, 2025Jan 31, 2025

    • wdl-unit-tests

      Public
      Collection of simple WDL's for use in unit testing of WDL-centric software such as PROOF
      Python
      •
      MIT License
      •0•0•29•9•Updated Jan 31, 2025Jan 31, 2025

    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      •4•13•0•0•Updated Jan 31, 2025Jan 31, 2025

    • ocdo

      Public
      Home of the OCDO public website
      SCSS
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • workflows-cirro

      Public
      Collection of workflow configurations for execution via Cirro
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • differential-expression-viewer

      Public
      Visualization of differential expression results
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • pgmap

      Public
      Python
      •1•0•5•1•Updated Jan 29, 2025Jan 29, 2025

    • marimo-publication

      Public
      Example of publishing serverless interactive visualizations using marimo
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      data-sciencebioinformaticswikicomputingsciwikifhdaslcommunitydocumentationopen-science
      HTML
      •
      Other
      •46•38•71•3•Updated Jan 29, 2025Jan 29, 2025

    • integrationsites

      Public
      The Integration Sites web application is a bioinformatics tool to detect the integration sites of HIV into the human genome
      JavaScript
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • tfcb_2025

      Public
      Course website for MCB 536 Tools for Computational Biology Fall 2025
      Jupyter Notebook
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • EBcb

      Public
      EasyBuild container build - A docker container for building software with EasyBuild
      Shell
      •1•7•0•0•Updated Jan 23, 2025Jan 23, 2025

    • easybuild-life-sciences

      Public
      Howto and implementation documentation
      easybuildlifesciencescientific-softwareeasyconfig
      C++
      •6•22•5•0•Updated Jan 22, 2025Jan 22, 2025

    • target-data-viz

      Public
      Shiny app for visualizing TARGET pediatric AML data
      HTML
      •2•3•8•0•Updated Jan 22, 2025Jan 22, 2025

    • early-onset-cancer-modeling

      Public
      Code supporting "Trends in Young-Onset Cancer Incidence: A Modeling Perspective"
      0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • Ishida-etal-2023

      Public
      Repo for the computational code used in Ishida et al. 2023, submitted.
      R
      •0•0•0•0•Updated Jan 12, 2025Jan 12, 2025

    • VISCfunctions

      Public
      R
      •
      Other
      •4•10•20•2•Updated Dec 31, 2024Dec 31, 2024

    • Hullar_Moosavi_MEC-ICC

      Public
      R
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • seatrac-hackday-2024

      Public
      Contains info and code examples for the SEATRAC TB Hackday 2024
      HTML
      •8•1•0•1•Updated Dec 11, 2024Dec 11, 2024

    • shiny-cromwell

      Public
      Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Taylor Firman.
      dasl
      R
      •
      MIT License
      •3•3•46•1•Updated Dec 9, 2024Dec 9, 2024

    • GDSCNsoilsites

      Public
      Homepage for BioDIGS Project. Learn about the project and download data.
      datametagenomicsstudent-researchbiodigs
      R
      •
      MIT License
      •0•1•10•0•Updated Dec 7, 2024Dec 7, 2024

    • Monopogen

      Public
      SNV calling from single cell sequencing
      HTML
      •
      GNU General Public License v3.0
      •19•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • eipm-calculator

      Public
      R
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • GI_mapping

      Public
      R
      •3•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • pg-dashboard

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • nf-cellranger-tools

      Public
      Collection of Nextflow tools for using CellRanger
      Nextflow
      •
      MIT License
      •1•1•0•0•Updated Nov 21, 2024Nov 21, 2024

    • scicomp-leftover

      Public
      Remove processes without Slurm Job
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024