Repositories list

• ShareIT-Act

  Public
  This repositories contain a set of documentation to satisfy H.R.9566 - SHARE IT Act.

  governanceshareit

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•2•2•0•Updated Jul 19, 2025Jul 19, 2025

• NEDSS-Modernization

  Public
  Java

  •5•21•0•9•Updated Jul 19, 2025Jul 19, 2025

• ixa-epi-isolation

  Public
  Rust

  •

  Apache License 2.0

  •2•1•42•6•Updated Jul 19, 2025Jul 19, 2025

• phylophoenix

  Public
  🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

  Python

  •

  Apache License 2.0

  •0•5•1•1•Updated Jul 19, 2025Jul 19, 2025

• phoenix

  Public
  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

  Python

  •

  Apache License 2.0

  •30•76•13•0•Updated Jul 19, 2025Jul 19, 2025

• eMKF

  Public
  SAS

  •

  Apache License 2.0

  •4•3•0•0•Updated Jul 18, 2025Jul 18, 2025

• Opioid_SUD_MHI_MedCodes

  Public
  Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

  Python

  •7•7•0•0•Updated Jul 18, 2025Jul 18, 2025

• NEDSS-Helm

  Public
  This repository is created for NEDSS Helm charts.

  Smarty

  •

  Apache License 2.0

  •4•2•0•17•Updated Jul 18, 2025Jul 18, 2025

• NEDSS-DataReporting

  Public
  Data Near Real Time Reporting micro services for Modernized NBS System

  TSQL

  •

  Apache License 2.0

  •5•2•0•3•Updated Jul 18, 2025Jul 18, 2025

• forecasttools-py

  Public
  A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.

  infrastructureautomationabstraction+ 2forecastinginfectious-disease-modeling

  Python

  •

  Apache License 2.0

  •2•7•21•7•Updated Jul 18, 2025Jul 18, 2025

• prime-reportstream

  Public
  ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

  fhirpublic-healthcivic-tech+ 1hl7

  Kotlin

  •

  Creative Commons Zero v1.0 Universal

  •43•79•1.2k•128•Updated Jul 18, 2025Jul 18, 2025

• pyrenew-hew

  Public
  Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew

  Python

  •

  Apache License 2.0

  •3•12•51•2•Updated Jul 18, 2025Jul 18, 2025

• dibbs-text-to-code

  Public
  Apache License 2.0

  •0•0•6•1•Updated Jul 18, 2025Jul 18, 2025

• cfa-subgroup-imputer

  Public
  Apache License 2.0

  •0•0•0•1•Updated Jul 18, 2025Jul 18, 2025

• cfa-azuretools

  Public
  Python

  •2•1•3•1•Updated Jul 18, 2025Jul 18, 2025

• dibbs-ecr-viewer

  Public
  DIBBS eCR Viewer

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1•8•122•9•Updated Jul 18, 2025Jul 18, 2025

• NEDSS-SystemAdminGuide

  Public
  SCSS

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• dibbs-ecr-refiner

  Public
  The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.

  XSLT

  •

  Apache License 2.0

  •2•2•41•3•Updated Jul 18, 2025Jul 18, 2025

• oamd-bio-test-data

  Public
  Apache License 2.0

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• hubverse-annotator

  Public
  Local web application that loads hubverse formatted tables and plots model forecasts, enabling the end user to compare and annotate models.

  applicationdata-sciencehubverse+ 1infectious-disease-modeling

  Python

  •

  Apache License 2.0

  •0•3•14•1•Updated Jul 18, 2025Jul 18, 2025

• RecordLinker

  Public
  The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.

  pythonsqlalchemyfastapi

  Python

  •

  Apache License 2.0

  •2•6•26•0•Updated Jul 18, 2025Jul 18, 2025

• prime-simplereport

  Public
  SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

  reactjsterraformgraphql+ 1spring-boot

  Java

  •

  Creative Commons Zero v1.0 Universal

  •64•60•188•19•Updated Jul 18, 2025Jul 18, 2025

• reedfrost

  Public
  Python

  •

  Apache License 2.0

  •0•0•4•0•Updated Jul 18, 2025Jul 18, 2025

• abm-python-wrappers

  Public
  Python

  •

  Apache License 2.0

  •2•0•17•2•Updated Jul 18, 2025Jul 18, 2025

• NEDSS-DataIngestion

  Public
  Data Ingestion for Modernization of NEDSS Project by Enquizit

  Java

  •

  Apache License 2.0

  •5•6•0•4•Updated Jul 18, 2025Jul 18, 2025

• cfa-uw-modeling

  Public
  Modeling of M. genitalium and Chlamydia trachomatis, CFA-UW Collaboration

  R

  •

  Apache License 2.0

  •2•1•3•1•Updated Jul 18, 2025Jul 18, 2025

• data-exchange-upload

  Public
  The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).

  Go

  •

  Apache License 2.0

  •6•9•43•6•Updated Jul 18, 2025Jul 18, 2025

• cfa-sero-protection

  Public
  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jul 18, 2025Jul 18, 2025

• cdc-open-viz

  Public
  CDC OpenViz is a library of React packages for data visualization.

  reactvisualizationdata+ 1visualization-library

  TypeScript

  •

  Apache License 2.0

  •30•44•0•1•Updated Jul 18, 2025Jul 18, 2025

• cfa_azure

  Public
  pythonazureazure-batch+ 2azure-container-registryazure-blob-storage

  Python

  •

  Apache License 2.0

  •6•9•2•0•Updated Jul 18, 2025Jul 18, 2025