Refactor

opr/__init__.py

@@ -1,6 +1,7 @@
 # -*- coding: utf-8 -*-
 """OPR modules."""
-from .opr_param import OPR_VERSION
-from .opr_obj import Primer
+from .params import OPR_VERSION
+from .primer import Primer
+from .errors import OPRBaseError
 
 __version__ = OPR_VERSION

opr/opr_obj.py → opr/primer.py

@@ -1,13 +1,13 @@
 # -*- coding: utf-8 -*-
-"""OPR modules."""
+"""OPR primer."""
 from warnings import warn
-from .opr_error import OPRBaseError
-from .opr_param import VALID_BASES
-from .opr_param import PRIMER_SEQUENCE_TYPE_ERROR, PRIMER_SEQUENCE_LENGTH_WARNING, PRIMER_SEQUENCE_VALID_BASES_ERROR, PRIMER_SEQUENCE_VALID_GC_CONTENT_RANGE_WARNING
-from .opr_param import PRIMER_LOWER_LENGTH, PRIMER_HIGHEST_LENGTH, PRIMER_LOWEST_GC_RANGE, PRIMER_HIGHEST_GC_RANGE
-from .opr_param import PRIMER_READ_ONLY_ATTRIBUTE_ERROR, PRIMER_NOT_REMOVABLE_ATTRIBUTE_ERROR
-from .opr_param import A_WEIGHT, T_WEIGHT, C_WEIGHT, G_WEIGHT, ANHYDROUS_MOLECULAR_WEIGHT_CONSTANT
-from .opr_param import DNA_COMPLEMENT_MAP
+from .errors import OPRBaseError
+from .params import VALID_BASES
+from .params import PRIMER_SEQUENCE_TYPE_ERROR, PRIMER_SEQUENCE_LENGTH_WARNING, PRIMER_SEQUENCE_VALID_BASES_ERROR, PRIMER_SEQUENCE_VALID_GC_CONTENT_RANGE_WARNING
+from .params import PRIMER_LOWER_LENGTH, PRIMER_HIGHEST_LENGTH, PRIMER_LOWEST_GC_RANGE, PRIMER_HIGHEST_GC_RANGE
+from .params import PRIMER_READ_ONLY_ATTRIBUTE_ERROR, PRIMER_NOT_REMOVABLE_ATTRIBUTE_ERROR
+from .params import A_WEIGHT, T_WEIGHT, C_WEIGHT, G_WEIGHT, ANHYDROUS_MOLECULAR_WEIGHT_CONSTANT
+from .params import DNA_COMPLEMENT_MAP
 
 
 class Primer:

otherfiles/RELEASE.md

@@ -1,14 +1,14 @@
 # OPR Release Instructions
 
-#### Last Update: 2023-12-20
+**Last Update: 2024-09-17**
 
 1. Create the `release` branch under `dev`
 2. Update all version tags
 	1. `setup.py`
 	2. `README.md`
 	3. `otherfiles/version_check.py`
 	4. `otherfiles/meta.yaml`
-	5. `opr/opr_param.py`
+	5. `opr/params.py`
 3. Update `CHANGELOG.md`
 	1. Add a new header under `Unreleased` section (Example: `## [0.1] - 2022-08-17`)
 	2. Add a new compare link to the end of the file (Example: `[0.2]: https://github.com/openscilab/opr/compare/v0.1...v0.2`)

otherfiles/version_check.py

@@ -27,7 +27,7 @@
     "README.md": README_ITEMS,
     "CHANGELOG.md": CHANGELOG_ITEMS,
     "SECURITY.md": SECURITY_ITEMS,
-    os.path.join("opr", "opr_param.py"): PARAMS_ITEMS,
+    os.path.join("opr", "params.py"): PARAMS_ITEMS,
 }
 
 TEST_NUMBER = len(FILES)