Merge pull request #2558 from mashehu/fix-swf-tags

parse include statement for plugin/nf-validation correctly
nf-core · Dec 7, 2023 · 43bd070 · 43bd070
2 parents 59d50b9 + 00e57b5
commit 43bd070
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diff --git a/nf_core/components/nfcore_component.py b/nf_core/components/nfcore_component.py
@@ -97,8 +97,10 @@ def _get_included_components(self, main_nf: Union[Path, str]):
                     #'../../../modules/nf-core/hisat2/align/main'
                     #'../bam_sort_stats_samtools/main'
                     #'../subworkflows/nf-core/bam_sort_stats_samtools/main'
+                    #'plugin/nf-validation'
                     component = line.strip().split()[-1].split(self.org)[-1].split("main")[0].strip("/")
                     component = component.replace("'../", "subworkflows/")
+                    component = component.replace("'", "")
                     included_components.append(component)
         return included_components
 

diff --git a/nf_core/subworkflows/lint/subworkflow_tests.py b/nf_core/subworkflows/lint/subworkflow_tests.py
@@ -106,6 +106,7 @@ def subworkflow_tests(_, subworkflow: NFCoreComponent):
             included_components = []
             if subworkflow.main_nf.is_file():
                 included_components = subworkflow._get_included_components(subworkflow.main_nf)
+            log.debug(f"Included components: {included_components}")
             log.debug(f"Required tags: {required_tags}")
             missing_tags = []
             for tag in required_tags + included_components: