Skip to content

Pull requests: nf-core/tools

New pull request New
39 Open 2,256 Closed
39 Open 2,256 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

chore(deps): update dependency textual to v0.89.1
#3440 opened Feb 1, 2025 by renovate bot Loading…
1 task
1
chore(deps): update dependency pytest-textual-snapshot to v1.1.0
#3439 opened Feb 1, 2025 by renovate bot Loading…
1 task
2
remove hard coded key prefix for schema in launcher
#3432 opened Jan 28, 2025 by mashehu Loading…
6
Retrieving module information of input and output and EDAM ontology from bio.tools
#3418 opened Jan 21, 2025 by mirpedrol • Draft
3 of 6 tasks
7
chore(deps): update dependency prompt_toolkit to <=3.0.50
#3412 opened Jan 21, 2025 by renovate bot Loading…
1 task
1
run renovate weekly
#3410 opened Jan 20, 2025 by mashehu Loading…
4
Remove args stub from module template to satisfy language server
#3403 opened Jan 17, 2025 by jfy133 Loading…
4 tasks
3.3.0
12
Add nf-core template version badges to README
#3396 opened Jan 14, 2025 by jfy133 Loading…
4 tasks
chore(deps): update dependency textual to v1
#3380 opened Jan 1, 2025 by renovate bot Loading…
1 task
3.3.0
chore(deps): update dependency textual-dev to v1.7.0
#3378 opened Jan 1, 2025 by renovate bot Loading…
1 task
Fix usage of cache path and implement parallized testing WIP Work in progress
#3291 opened Nov 21, 2024 by mashehu • Draft
Template: Add gpu profile
#3272 opened Nov 7, 2024 by mashehu Loading… 3.3.0
16
3262 Fix pipeline lint bug for pipelines with minimal template features
#3265 opened Oct 30, 2024 by awgymer • Draft
4 tasks
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.3.0
10
Container cache download download nf-core download WIP Work in progress
#3163 opened Sep 7, 2024 by muffato • Draft
1 of 4 tasks
3.3.0
2
@muffato
14
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
6
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
2
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
3
Schema: rewrite to run local only and handle newer schema versions WIP Work in progress
#3117 opened Aug 14, 2024 by mashehu Loading…
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
feat: Install subworkflows with modules from different remotes enhancement
#3083 opened Jul 29, 2024 by jvfe Loading…
2 of 4 tasks
3.4.0
@jvfe
27
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
ci: Run checks on renovate branches to avoid creating and merging PRs
#3018 opened Jun 6, 2024 by edmundmiller Loading…
@edmundmiller
1
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
3.4.0
2
Allow nf-core download -r to download commits awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again. download nf-core download Stale
#2906 opened Apr 4, 2024 by fellen31 • Draft
4 tasks
5
ProTip! What’s not been updated in a month: updated:<2025-01-03.