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Pull requests: nf-core/tools

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Pull requests list

linting: handle missing test/nextflow.config gracefully
#3603 opened Jun 2, 2025 by mashehu Loading…
3
Update pre-commit hook pre-commit/mirrors-mypy to v1.16.0
#3594 opened Jun 1, 2025 by renovate bot Loading…
1 task
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.11.12
#3593 opened Jun 1, 2025 by renovate bot Loading…
1 task
1
Refactor module lint tests
#3592 opened May 30, 2025 by edmundmiller • Draft
4 tasks
3.4.0
@edmundmiller
1
Update conda env sorting
#3591 opened May 30, 2025 by edmundmiller Loading…
4 tasks
3.4.0
1
@edmundmiller
12
Issues/3466 Move away from Gitpod
#3569 opened May 14, 2025 by JulianFlesch • Draft
2 of 4 tasks
3.4.0
36
Add opt-in feature gpu
#3562 opened May 10, 2025 by ningyuxin1999 Loading…
1 of 5 tasks
1
3
Allow spaces in directory paths
#3552 opened Apr 29, 2025 by robsyme Loading…
3
Template: Don't fail CI on latest-everything
#3543 opened Apr 24, 2025 by mashehu Loading…
15
Drop python 3.8, add tests with python 3.13
#3538 opened Apr 15, 2025 by mashehu Loading… 3.4.0
1
bump nf-schema to 2.4.1
#3533 opened Apr 10, 2025 by nvnieuwk Loading…
9
Fix modules meta.yml file structure
#3532 opened Apr 7, 2025 by mirpedrol Loading…
5 of 7 tasks
8
Update dependency textual to v3
#3522 opened Apr 1, 2025 by renovate bot Loading…
1 task
1
Add docker downloads
#3517 opened Mar 26, 2025 by nikhil • Draft
4 tasks
4
Moved all singularity-related download functions into a new file download nf-core download
#3509 opened Mar 25, 2025 by muffato • Draft
4 tasks
@muffato
42
Move WorkflowRepo class into seperate file, since it will be shared b…
#3506 opened Mar 24, 2025 by MatthiasZepper • Draft
1 of 4 tasks
8
Fix multiple workflow in subworkflow
#3486 opened Mar 7, 2025 by LouisLeNezet Loading…
2 of 4 tasks
15
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
11
Remove args stub from module template to satisfy language server
#3403 opened Jan 17, 2025 by jfy133 Loading…
4 tasks
3.4.0
16
Update dependency textual-dev to v1.7.0
#3378 opened Jan 1, 2025 by renovate bot Loading…
1 task
3262 Fix pipeline lint bug for pipelines with minimal template features awaiting-feedback Stale
#3265 opened Oct 30, 2024 by awgymer • Draft
4 tasks
2
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.4.0
10
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
3
ProTip! Exclude everything labeled bug with -label:bug.