Added BBMAP/REPAIR submodule

[mazzalab]

Added the repair.sh BBMap's submodule

PR checklist

Closes #7248

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[mazzalab]

Hi @SPPearce, can you suggest how to set up the prefix in this case to comply with the recommendations?

[SPPearce]

Hi @SPPearce, can you suggest how to set up the prefix in this case to comply with the recommendations?

Ok, here you have two distinct things that are being emitted, so I can see the reason to have to name them with a fixed suffix.

[mazzalab]

OK I finalized the module. Have you @SPPearce time for a quick review?

[SPPearce]

Looks good to me