Skip to content

Pull requests: nf-core/modules

New pull request New
174 Open 7,067 Closed
174 Open 7,067 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add new module stainwarpy/register
#9777 opened Jan 26, 2026 by tckumarasekara Loading…
13 of 17 tasks
1
Adding new module stainwarpy/extractchannel
#9776 opened Jan 26, 2026 by tckumarasekara Loading…
13 of 17 tasks
1
Add traitar3/pfamannotation module for Pfam domain annotation
#9775 opened Jan 26, 2026 by Copilot AI • Draft
1
@brovolia
feat(bandage/image): switch to topic versions and allow compressed input
#9773 opened Jan 26, 2026 by prototaxites Loading…
2 of 17 tasks
1
Update METABAT2_METABAT2 to not compress input files when stageIn module is true (and topics conversion)
#9769 opened Jan 26, 2026 by jfy133 Loading…
17 tasks
7
Update Rundbcan modules
#9768 opened Jan 26, 2026 by HaidYi Loading…
11 of 16 tasks
1
Update BCFTOOLS/ISEC: additional arguments
#9766 opened Jan 23, 2026 by georgiakes Loading…
2 of 17 tasks
1
2
feat: Add emit statements to support Nextflow workflow outputs
#9765 opened Jan 23, 2026 by pinin4fjords Loading…
1 task
3
Bwa index to topic
#9763 opened Jan 23, 2026 by SPPearce Loading…
2
Fix variable redeclarations for strict syntax compliance (from branch)
#9756 opened Jan 22, 2026 by ewels Loading…
miniasm/ updated to use the new versions topics
#9755 opened Jan 22, 2026 by MohineTAlam Loading…
17 tasks done
8
migrate toulligqc to topic versions
#9750 opened Jan 22, 2026 by eit-maxlcummins Loading…
5 of 10 tasks
1
migrate untar to versions topic
#9749 opened Jan 22, 2026 by eit-maxlcummins Loading…
5 of 10 tasks
migrate shovill module to topic versions
#9748 opened Jan 22, 2026 by eit-maxlcummins Loading…
5 of 10 tasks
3
update to new versions capture for checkm2 databasedownload and checkm2 predict
#9744 opened Jan 22, 2026 by eit-maxlcummins Loading…
5 of 10 tasks
1
Remove unused variables from stub section
#9736 opened Jan 22, 2026 by JoseEspinosa Loading…
4 tasks done
Add nextflow lint
#9726 opened Jan 21, 2026 by maxulysse Loading…
17 tasks
4
feat(yallhap/classify): Add new module for Y-chromosome haplogroup classification
#9704 opened Jan 20, 2026 by trianglegrrl • Draft
4 tasks done
5
Seqkit replace - fix #9647 and #9646
#9686 opened Jan 19, 2026 by ammaraziz Loading…
1
1
Update all deeptools conda environment YAML files to version 3.5.6
#9685 opened Jan 16, 2026 by bentyeh Loading…
2 of 17 tasks
7
Fix variable redeclarations for strict syntax compliance
#9684 opened Jan 16, 2026 by ewels Loading…
25
new subworkflow - fastq shortreads preprocess qc
#9665 opened Jan 15, 2026 by vagkaratzas Loading…
8 of 17 tasks
1
24
Add ViralConsensus module
#9655 opened Jan 14, 2026 by lucaspatel Loading…
15 of 17 tasks
1
8
add nirvana
#9633 opened Jan 9, 2026 by FriederikeHanssen Loading…
17 tasks
8
BBsplit unmapped - enhancement
#9627 opened Jan 8, 2026 by EladH1 Loading…
4 of 17 tasks
1
ProTip! Filter pull requests by the default branch with base:master.