Move Changes action locally

.github/actions/detect-nf-test-changes/.dockerignore

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+*
+!Dockerfile
+!entrypoint.py
+!entrypoint.sh
+!requirements.txt

.github/actions/detect-nf-test-changes/.github/dependabot.yml

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+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://help.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "docker" 
+    directory: "/" 
+    target-branch: "main"
+    schedule:
+      interval: "daily"
+  - package-ecosystem: "github-actions" 
+    directory: "/" 
+    target-branch: "main"
+    schedule:
+      interval: "daily"

.github/actions/detect-nf-test-changes/.github/workflows/test/ignoreme.txt

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+# Includes a bunch of import or setup statements to try and trigger a false positive
+include { SUBWORKFLOW_A } from './subworkflows/a/main.nf'
+include { SUBWORKFLOW_A } from '../subworkflows/a/main.nf'
+process "PROCESS_A"
+setup {
+    run("PROCESS_A") {
+        script "../../a/main.nf"
+        process {
+            """
+            """
+        }
+    }
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/include.yml

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+".":
+    - ./.github/workflows/**
+    - ./nf-test.config
+    - ./nextflow.config
+  tests:
+    - ./assets/*
+    - ./bin/*
+    - ./conf/*
+    - ./main.nf
+    - ./nextflow_schema.json
+

.github/actions/detect-nf-test-changes/.github/workflows/test/main.nf

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+include { SUBWORKFLOW_A } from './subworkflows/a/main.nf'
+
+workflow {
+    // Fake
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/modules/a/main.nf

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+process PROCESS_A {
+    // No change
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/modules/a/tests/main.nf.test

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+nextflow_process {
+
+    name "Test process A"
+    script "../main.nf"
+    process "PROCESS_A"
+
+    test("mytest") {
+    }
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/modules/b/main.nf

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+process PROCESS_B {
+    // Fake process
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/modules/b/tests/main.nf.test

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+nextflow_process {
+
+    name "Test process B"
+    script "../main.nf"
+    process "PROCESS_B"
+
+    setup {
+        run("PROCESS_A") {
+            script "../../a/main.nf"
+            process {
+                """
+                """
+            }
+        }
+    }
+
+    test("mytest") {
+    }
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/modules/c/main.nf

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+process PROCESS_C {
+    // No change
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/modules/c/tests/main.nf.test

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+nextflow_process {
+
+    name "Test process C"
+    script "../main.nf"
+    config "nextflow.config"
+    process "PROCESS_C"
+
+    test("mytest") {
+    }
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/subworkflows/a/main.nf

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+include { 
+    PROCESS_A;
+    PROCESS_B
+} from '../../modules/a/main.nf'
+
+workflow SUBWORKFLOW_A {
+    PROCESS_A()
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/subworkflows/a/tests/main.nf.test

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+nextflow_workflow {
+
+    name "Test subworkflow A"
+    script "../main.nf"
+    workflow "SUBWORKFLOW_A"
+    test("mytest") {
+    }
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/tests/main.pipeline.nf.test

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+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "PIPELINE"
+
+    test("Run with profile test") {
+        when { }
+        then { }
+    }
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/tests/main.workflow.nf.test

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+nextflow_workflow {
+
+    name "Test main workflow"
+    script "../main.nf"
+    workflow "MAIN_WORKFLOW"
+    test("mytest") {
+    }
+}

.github/actions/detect-nf-test-changes/.github/workflows/test/workflows/main.nf

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+include { SUBWORKFLOW_A } from '../subworkflows/a/main.nf'
+
+workflow main {
+    //
+}

.github/actions/detect-nf-test-changes/.gitignore

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+__pycache__/
+tests/__pycache__/
+*.pyc

.github/actions/detect-nf-test-changes/CHANGELOG.md

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+# Changelog
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased] - YYYY-MM-DD
+
+### Added
+* This template of a changelog. It is not really the changelog for this
+  template repository.
+
+### Changed
+
+### Deprecated
+
+### Removed
+
+### Fixed
+
+
+## [x.x.x] - YYYY-MM-DD

.github/actions/detect-nf-test-changes/Dockerfile

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+FROM python:3.12-slim-bullseye
+
+COPY requirements.txt requirements.txt
+
+RUN apt-get update \
+    && apt-get install -y git \
+    && pip install --no-cache-dir --upgrade pip \
+    && pip install -r requirements.txt
+
+COPY entrypoint.py /entrypoint.py
+COPY entrypoint.sh /entrypoint.sh
+
+ENTRYPOINT ["/entrypoint.sh"]

.github/actions/detect-nf-test-changes/LICENSE

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+MIT License
+
+Copyright (c) 2020 Vincent A. Cicirello
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.