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funannotate v1.8.3

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@nextgenusfs nextgenusfs released this 01 Jan 22:34
· 336 commits to master since this release
v1.8.3
53a5ed7

Bug fix release

  • remove auto fix for RNA-seq data if it does not have Trinity compatible headers -- warn user to fix instead #485
  • fix antiSMASH v5 parsing #490, update secmet GBK format of clusters
  • add funannotate util gff-rename script
  • use natsort for sorting contigs/names so gene names are correctly auto incremented #501
  • fix for signalp v5 #494
  • support fasta headers with spaces for clean #504
  • rstrip(*) from proteins if GFF/FASTA passed; #508
  • expose --p2g_prefilter to use tblastn for mapping protein evidence #495
  • add --anysymbol to mafft calls #514
  • use frameshift diamond if >2.0.5 #503
  • improve glimmerhmm parsing error report #519
  • add --no-progress option to clean up terminal output (ie log files from cluster)
  • use sorted bedtools intersection to reduce memory usage #522
  • add --trnascan option to predict #523
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