Skip to content

Issues: nextgenusfs/funannotate

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

270 Open 744 Closed
270 Open 744 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

SNAP prediction failed and overlaps exon of the .zff file
#1078 opened Nov 6, 2024 by augauga
Funannotate fix each run give new model genes to must have fixed
#1077 opened Oct 28, 2024 by Malokidz
Funannotate compare stuck at the Proteinortho step for 2 days. The command is at sleep.
#1076 opened Oct 24, 2024 by akshayoo
1
busco_db Installation Issue
#1075 opened Oct 24, 2024 by xianlord93
Bedtools intersect error at the end of funannote predict
#1074 opened Oct 22, 2024 by jaylward2
Another test data failure after fresh conda install
#1073 opened Oct 22, 2024 by amcomeau
2
funannotate predict errors
#1072 opened Oct 15, 2024 by liuyca1
12
BUSCO-mediated training failure in 1.8.17, but not in 1.8.15
#1071 opened Oct 7, 2024 by JWDebler
11
"funannotate remote -m phobius" stops processing my file
#1070 opened Oct 4, 2024 by alpargata97
Augustus Training Error: Missing ExonModel File and UnboundLocalError in Funannotate v1.8.17 Despite Pretrained Species Use
#1069 opened Sep 20, 2024 by kalonji08
5
Funannotate compare
#1067 opened Sep 11, 2024 by Niohuruzh
installing databases failed
#1066 opened Sep 2, 2024 by jacob-israel
4
cannot install funannotate, Executing transaction allthe time.
#1065 opened Aug 31, 2024 by winteraatt
1
funannotate-predict.py: error: unrecognized arguments: --stopCodonExcludedFromCDS=False
#1064 opened Aug 28, 2024 by wangpeng-design
3
Unique proteins from Funannotate compare
#1063 opened Aug 26, 2024 by manjumoorthy95
funannotate compare fails at diamond
#1062 opened Aug 22, 2024 by jsimba-99
2
Funannotate Installation : How to configure funannotate app find the Trimmomatic program?
#1061 opened Aug 21, 2024 by jacob-israel
5
funannotate annotate uses $FUNANNOTATE_DB over -d /path/to/databases for go.obo
#1059 opened Aug 11, 2024 by mjacksonhill
2
Setup of funannotate databases fails
#1058 opened Jul 25, 2024 by ekg123
3
Funannotate train failing when using mysql due to socket error
#1056 opened Jul 13, 2024 by monkfromouterspace
2
Issues with multiple transcripts: MEROPs, BUSCO, PFAM and dbCAN/CAZyme annotations missing for T2 transcripts from final annotation file
#1055 opened Jul 12, 2024 by calizilla
URL update needed for the latest MEROPs database file
#1054 opened Jul 11, 2024 by calizilla
5
Augustus installation error ( When I use the make command it gives this error)
#1053 opened Jul 7, 2024 by pvshekar
Parsing uniprot blast hits
#1052 opened Jun 26, 2024 by SnuniKVC
linux/arm64 docker image
#1050 opened Jun 23, 2024 by JLSteenwyk
2
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.