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added support for triplets #9

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added support for triplets #9

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Michal-Babins
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Added support in generate_objects.py to be able to take FIle | Description | Name to run code as such:

python generate_objects.py --type "nmdc:ReadQCAnalysisActivity" --id ${informed_by} \
             --name "Read QC Activity for ${proj}" --part ${proj} \
             --start ${start} --end $end \
             --resource '${resource}' --url ${url_root}${proj}/qa/ --giturl ${git_url} \
             --extra stats.json \
             --inputs  Ecoli_10x-int.fastq.gz \
             --outputs \
             ${qadir}/nmdc_mga0rgxp26_filtered.fastq.gz "Reads QC result fastq (clean data)" "Filtered Sequencing Read"\
             ${qadir}/nmdc_mga0rgxp26_filterStats.txt "Reads QC summary statistics" "QC Statistics" 

Michal-Babins and others added 3 commits February 7, 2022 09:30
- rqcstats script
- python requirements
* Updates to the general Docker image and the hmm image
* Update to the generate_objects script to use triplets
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