GitHub - mccurcio/anti-cancer-human-modeling: CART, K-Means, Apriori, Adaboost, RFE; models using Anti-cancer peptides vs Human proteins

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CART, K-Means, Apriori, Adaboost, RFE; models using Anti-cancer peptides vs Human proteins

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Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
1data		1data
ORIGINAL-DATA		ORIGINAL-DATA
boruta-dim-redux-GOOD		boruta-dim-redux-GOOD
corrplot-GOOD		corrplot-GOOD
eda-GOOD		eda-GOOD
factominer-NO-GOOD		factominer-NO-GOOD
misc-info		misc-info
near-zero-variance-GOOD		near-zero-variance-GOOD
pca-dim-redux		pca-dim-redux
realtive-imp-NO-GOOD		realtive-imp-NO-GOOD
reject-corr-predictors-GOOD		reject-corr-predictors-GOOD
rfe		rfe
.gitignore		.gitignore
LICENSE		LICENSE
README		README
anti-cancer-human-modeling.Rproj		anti-cancer-human-modeling.Rproj

Repository files navigation

.
|-- 1data
|   |-- anti-cancer-comps
|   |   |-- Anti-cancer-peptides-read-fasta.rmd
|   |   `-- anti_cancer_comps.csv
|   |-- cancer_human_comps.csv
|   `-- human-comps
|       |-- human-control-comps.rmd
|       |-- human_ctrl_comps.csv
|       `-- uniprot-taxonomy%3A%22Homo+sapiens+%28Human%29+%5B9606%5D%22+existence%3A%22Evid--.fasta
|-- LICENSE
|-- ORIGINAL-DATA
|   |-- anti_cancer_comps.csv
|   |-- cancer_human_comps.csv
|   |-- human_ctrl_comps.csv
|   |-- uniprot-anti+cancer+peptide.fasta.gz
|   `-- uniprot-taxonomy%3A%22Homo+sapiens+%28Human%29+%5B9606%5D%22+existence%3A%22Evid--.fasta.gz
|-- README
|-- README.2
|-- anti-cancer-human-modeling.Rproj
|-- boruta-dim-redux-GOOD
|   |-- Boruta-notes.rmd
|   |-- boruta-dim-redux-1.html
|   |-- boruta-dim-redux-1.rmd
|   |-- boruta-dim-redux-2-50-runs.rmd
|   |-- boruta-dim-redux-2.html
|   |-- boruta-dim-redux-3-500-runs.html
|   |-- boruta-dim-redux-3-500-runs.rmd
|   `-- boruta-dim-redux-4-500-runs.rmd
|-- corrplot-GOOD
|   |-- corrplot-1.html
|   |-- corrplot-1.rmd
|   |-- corrplot-2-w-post-boruta.html
|   `-- corrplot-2-w-post-boruta.rmd
|-- eda-GOOD
|   |-- class_table.Rdata
|   `-- eda.1.rmd
|-- factominer-NO-GOOD
|   |-- Investigate.Rmd
|   |-- Workspace.RData
|   |-- code.R
|   `-- factominer-1.rmd
|-- misc-info
|   |-- KEEP_mono_di_peptide_analysis.Rmd
|   |-- dipeptide_analysis.Rmd
|   |-- mono_di_peptide_analysis-II.Rmd
|   `-- na_test.rmd
|-- near-zero-variance-GOOD
|   |-- near-zero-variance-1.html
|   `-- near-zero-variance-1.rmd
|-- pca-dim-redux
|   |-- pca-dim-redux-139-features-9-2-19.rmd
|   |-- pca-dim-redux-139-wAC-features-9-2-19.rmd
|   |-- pca-dim-redux-142-features-9-2-19.rmd
|   |-- pca-dim-redux-20aa-BEST.html
|   |-- pca-dim-redux-20aa-BEST.rmd
|   |-- pca-dim-redux-20aa-beta.rmd
|   |-- pca-dim-redux-20aa.rmd
|   |-- pca-dim-redux-friday1.rmd
|   `-- pca-dim-redux.rmd
|-- realtive-imp-NO-GOOD
|   `-- rela-imp-dim-redux-1.rmd
|-- reject-corr-predictors-GOOD
|   |-- identifying-correlated-predictors-1.html
|   `-- identifying-correlated-predictors-1.rmd
`-- rfe
    `-- rfe-1.rmd

14 directories, 52 files