Add "tseq" output & make available to Python #1201
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It'd be handy to be able to retrieve the sequence which minimap2 has matched with, to generate HGVS strings or etc.
You could reconstruct this from the long form CS string (see #1194) but it seems like it'd be handy to just retrieve the whole string in one go.
This PR adds an
mm_gen_tseqC function to retrieve the sequence, and atseqproperty on the python Alignment object.I've called it "tseq" because it's called that in the write_cs_ds_or_MD function but it's not necessarily a great name.