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r1270: fixed ts tag for PE reads
CI #239: Commit a832a42 pushed by lh3
April 11, 2025 05:08 1m 3s master
April 11, 2025 05:08 1m 3s
r1269: added --write-junc
CI #238: Commit a5411fc pushed by lh3
April 11, 2025 05:01 2m 18s master
April 11, 2025 05:01 2m 18s
r1268: avoid extra small introns
CI #237: Commit bd03d97 pushed by lh3
April 8, 2025 03:33 1m 20s master
April 8, 2025 03:33 1m 20s
r1267: penalize introns without signals
CI #236: Commit 9c3c4b1 pushed by lh3
April 7, 2025 13:51 1m 7s master
April 7, 2025 13:51 1m 7s
r1266: fine tune mapq for short RNA-seq reads
CI #235: Commit 3542a3d pushed by lh3
April 7, 2025 04:57 1m 1s master
April 7, 2025 04:57 1m 1s
r1265: prefer spliced alignment
CI #234: Commit 75619c7 pushed by lh3
April 7, 2025 04:31 1m 2s master
April 7, 2025 04:31 1m 2s
r1264: added --jump-min-match, default to 3
CI #233: Commit fbb9c0f pushed by lh3
April 7, 2025 03:19 1m 11s master
April 7, 2025 03:19 1m 11s
r1263: ~5-10% performance improvement
CI #232: Commit af09464 pushed by lh3
April 7, 2025 00:50 1m 7s master
April 7, 2025 00:50 1m 7s
fixed minor grammar issues
CI #231: Commit d43f356 pushed by lh3
April 6, 2025 22:35 1m 10s master
April 6, 2025 22:35 1m 10s
r1261: code clean up; renamed --jump-bed to -j
CI #230: Commit 38acd66 pushed by lh3
April 6, 2025 22:33 1m 5s master
April 6, 2025 22:33 1m 5s
r1259: --jump-bed now functional
CI #229: Commit 54a4718 pushed by lh3
April 6, 2025 21:13 1m 10s master
April 6, 2025 21:13 1m 10s
caution that the splice:sr is experimental
CI #228: Commit dd90d9d pushed by lh3
April 4, 2025 20:35 1m 4s master
April 4, 2025 20:35 1m 4s
r1249: remove redundant junctions in --junc-bed
CI #227: Commit cbe8d61 pushed by lh3
April 4, 2025 00:43 1m 3s master
April 4, 2025 00:43 1m 3s
r1248: support --end-bonus in splice mode
CI #226: Commit 9d06cef pushed by lh3
April 3, 2025 16:19 1m 11s master
April 3, 2025 16:19 1m 11s
minor
CI #225: Commit 924fc4d pushed by lh3
April 2, 2025 17:06 1m 2s master
April 2, 2025 17:06 1m 2s
document splice:sr in README
CI #224: Commit fc2d1e9 pushed by lh3
April 2, 2025 15:24 1m 4s master
April 2, 2025 15:24 1m 4s
r1245: allow shorter hits for splice:sr
CI #223: Commit bbf0bb8 pushed by lh3
April 2, 2025 04:13 1m 9s master
April 2, 2025 04:13 1m 9s
r1242: append /[12] to read name in --frag mode
CI #222: Commit 83e9b2e pushed by lh3
April 1, 2025 14:48 1m 6s master
April 1, 2025 14:48 1m 6s
r1241: error out on unintended --score-N
CI #221: Commit e816fd0 pushed by lh3
April 1, 2025 14:13 1m 6s master
April 1, 2025 14:13 1m 6s
add jun_bed and uf parameter in mappy
CI #220: Pull request #1291 opened by loganylchen
April 1, 2025 13:46 1m 7s loganylchen:master
April 1, 2025 13:46 1m 7s
documented zd; resolve #1108
CI #219: Commit a955b1f pushed by lh3
April 1, 2025 13:34 1m 7s master
April 1, 2025 13:34 1m 7s
pages build and deployment
pages-build-deployment #1: by lh3
April 1, 2025 13:25 34s gh-pages
April 1, 2025 13:25 34s
r1240: fixed wrong logging information
CI #218: Commit 54fa925 pushed by lh3
April 1, 2025 13:18 1m 13s master
April 1, 2025 13:18 1m 13s
r1239: resovled #963
CI #217: Commit d4a396c pushed by lh3
April 1, 2025 03:15 1m 15s master
April 1, 2025 03:15 1m 15s
r1238: resolve #589
CI #216: Commit bdf46f5 pushed by lh3
April 1, 2025 03:08 1m 2s master
April 1, 2025 03:08 1m 2s