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  1. plant-seg plant-seg Public

    A tool for cell instance aware segmentation in densely packed 3D volumetric images

    Python 110 34

  2. spoco spoco Public

    PyTorch implementation of SPOCO

    Python 32 7

  3. go-nuclear go-nuclear Public

    Guides and code for 3D nuclear instance segmentation

    Python 22 3

  4. MorphoFeatures MorphoFeatures Public

    MorphoFeatures code and data

    Python 20 3

  5. hylfm-net hylfm-net Public

    Python 14 2

  6. teaching-dl-course-2019 teaching-dl-course-2019 Public

    EMBL Deep Learning course 2019 exercises and materials

    Jupyter Notebook 6 9

Repositories

Showing 10 of 38 repositories
  • plant-seg Public

    A tool for cell instance aware segmentation in densely packed 3D volumetric images

    Python 110 MIT 34 41 (2 issues need help) 1 Updated Apr 10, 2025
  • bioimageio_rs Public

    A rust implementation of bioimage spec parser

    Rust 1 2 1 0 Updated Apr 9, 2025
  • go-nuclear Public

    Guides and code for 3D nuclear instance segmentation

    Python 22 MIT 3 0 1 Updated Mar 18, 2025
  • hylfm-net Public
    Python 14 MIT 2 0 1 Updated Mar 13, 2025
  • ADL4IA-2025 Public
    Jupyter Notebook 3 0 1 0 Updated Jan 13, 2025
  • predoc-course Public

    Kreshuk Lab's EMBL EIPP predoc course teaching material, each branch keeps the record of a specific season

    Jupyter Notebook 2 2 0 0 Updated Nov 4, 2024
  • teaching-dl-course-2019 Public

    EMBL Deep Learning course 2019 exercises and materials

    Jupyter Notebook 6 MIT 9 1 0 Updated Aug 13, 2024
  • spoco Public

    PyTorch implementation of SPOCO

    Python 32 7 1 1 Updated Aug 3, 2024
  • mouse-embryo-seg Public

    3D segmentation of nuclei (fixed) and cells (live) of the developing mouse embryo

    Python 6 1 0 0 Updated Jul 23, 2024
  • covid-if-2 Public
    Python 0 0 0 0 Updated Jul 14, 2024
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