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Make scplot compatible with pegasusio #6

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Make scplot compatible with pegasusio #6

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yihming
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@yihming yihming commented Jun 12, 2020

  • In violin, heatmap, scatter, dotplot, scatter_matrix, embedding, variable_feature_plot, volcano, composition_plot, make adata be of either AnnData or PegasusIO MultimodalData type. And in code, if adata is not AnnData, convert it to AnnData.

  • Add pegasusio to dependencies.

  • Modify variable_feature_plot to be able to plot for Pegasus Seurat flavor highly variable genes.

@yihming yihming marked this pull request as draft June 12, 2020 17:43
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