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klarman-cell-observatory

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  1. scPhere scPhere Public

    Python 98 14

  2. HTAPP-Pipelines HTAPP-Pipelines Public

    A record of the analysis pipelines used to create the HTAPP data

    Jupyter Notebook 29 11

  3. scSVA scSVA Public

    Single-cell Scalable Visualization and Analytics

    R 25 8

  4. scPlot scPlot Public

    Single cell interactive plotting tools

    Jupyter Notebook 23 8

  5. PowerAnalysisForSpatialOmics PowerAnalysisForSpatialOmics Public

    Jupyter Notebook 23 5

  6. forceatlas2 forceatlas2 Public

    Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d

    Java 22 4

Repositories

Showing 10 of 34 repositories
  • HTAPP-Pipelines Public

    A record of the analysis pipelines used to create the HTAPP data

    klarman-cell-observatory/HTAPP-Pipelines’s past year of commit activity
    Jupyter Notebook 29 11 1 0 Updated Dec 16, 2024
  • PowerAnalysisForSpatialOmics Public
    klarman-cell-observatory/PowerAnalysisForSpatialOmics’s past year of commit activity
    Jupyter Notebook 23 BSD-3-Clause 5 3 0 Updated Oct 4, 2024
  • scbtf_experiments Public

    Experiments ran with scbtf

    klarman-cell-observatory/scbtf_experiments’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Aug 6, 2024
  • scBTF Public

    Single Cell Bayesian Tensor Factorization

    klarman-cell-observatory/scBTF’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Aug 6, 2024
  • scrnaseq_pipeline Public
    klarman-cell-observatory/scrnaseq_pipeline’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jun 6, 2024
  • perturbseq Public

    Perturb-seq analysis package

    klarman-cell-observatory/perturbseq’s past year of commit activity
    Python 14 MIT 3 2 0 Updated May 2, 2024
  • sc_eVIP Public

    Variant impact phenotyping using Perturb-seq

    klarman-cell-observatory/sc_eVIP’s past year of commit activity
    Jupyter Notebook 9 MIT 2 1 1 Updated Apr 22, 2024
  • scPhere Public
    klarman-cell-observatory/scPhere’s past year of commit activity
    Python 98 14 9 1 Updated Mar 24, 2023
  • snFFPE-Seq Public

    analysis for single nucleus FFPE-Sequencing

    klarman-cell-observatory/snFFPE-Seq’s past year of commit activity
    Jupyter Notebook 3 MIT 1 0 0 Updated Sep 18, 2022
  • Perturb-CITE-seq Public
    klarman-cell-observatory/Perturb-CITE-seq’s past year of commit activity
    Python 15 2 0 0 Updated Jun 2, 2022
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