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Fix audit must-fixes: public donor fields, delete-before-write, index… - #1053
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… write routes, timeouts - Exclude private Donor fields under "donors" for Samples, Datasets and Publications, and add the donor/origin_samples/source_samples rules for Publications. - Stop deleting a document before writing its replacement, and raise when a write is rejected instead of logging and continuing. - Reject PUT /update and POST /add for every index except 'files'. - Add timeouts to every requests call, and fetch the provenance schema and organ types once per process. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Following merged PR #1052 for TEST