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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 4 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python 1

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 3

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 5

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 7

Repositories

Showing 10 of 199 repositories
  • data-containers Public

    Code for building and manipulating data containers like RO-Crate, Croissant, etc.

    hubmapconsortium/data-containers's past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 14, 2026
  • documentation Public

    General Documentation For HuBMAP

    hubmapconsortium/documentation's past year of commit activity
    Python 0 1 8 0 Updated Nov 13, 2026
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui's past year of commit activity
    TypeScript 10 MIT 5 116 10 Updated Nov 13, 2026
  • hra-do-processor Public

    hra-do-processor: HRA Digital Objects Processor

    hubmapconsortium/hra-do-processor's past year of commit activity
    JavaScript 4 MIT 1 19 3 Updated Nov 13, 2026
  • hra-kg Public

    Human Reference Atlas Knowledge Graph

    hubmapconsortium/hra-kg's past year of commit activity
    Mermaid 4 MIT 1 16 0 Updated Nov 13, 2026
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools's past year of commit activity
    Python 9 MIT 19 0 4 Updated Nov 13, 2026
  • portal-containers Public

    Docker containers to pre-process data for visualization in the portal

    hubmapconsortium/portal-containers's past year of commit activity
    Python 0 MIT 1 22 (1 issue needs help) 8 Updated Nov 13, 2026
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui's past year of commit activity
    TypeScript 13 MIT 3 173 4 Updated Nov 13, 2026
  • gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    hubmapconsortium/gateway's past year of commit activity
    Python 0 MIT 1 9 2 Updated Nov 13, 2026
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api's past year of commit activity
    Python 0 MIT 0 12 1 Updated Nov 12, 2026
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