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Feat/bulk methylation templates #80

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merged 38 commits into from
Nov 29, 2023
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anngvu
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@anngvu anngvu commented Nov 28, 2023

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github-actions bot commented Nov 28, 2023

Test Suite Report

Template Generation

template result link
BulkMethylation-seqLevel1 😄 template link
BulkMethylation-seqLevel2 😄 template link
BulkMethylation-seqLevel3 😄 template link
CohortCoreTemplate 😄 template link
ImagingLevel2 😄 template link
ImagingLevel2Channels 😄 template link
ScRNA-seqLevel1 😄 template link
ScRNA-seqLevel2 😄 template link
ScRNA-seqLevel3 😄 template link
ScRNA-seqLevel4 😄 template link

Manifest Validation

TODO

@anngvu anngvu force-pushed the feat/bulk-methylation-templates branch from 7ff8682 to 9c6da66 Compare November 28, 2023 22:13
@anngvu anngvu linked an issue Nov 28, 2023 that may be closed by this pull request
@anngvu anngvu requested review from cconrad8 and elv-sb November 28, 2023 23:46
@@ -1,15 +1,23 @@
classes:

Sequencing:
File:
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Wondering if we want to change imaging to inherit from "File" as well.

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Might not be as easy as I think though..

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OK after trial and errors..I just changed LabID to ParticipantID to be consistent with the other templates..I think that's all for now -

General question on the inheriting - Can we do "is_a" across different yaml files? (Like have imaging inherit from File if it's in another yaml file?)

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OK, thanks for updating LabID to make it more consistent. Yep, can do is_a across different files.

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We'll apply the refactoring for imaging in another PR to keep this one smaller.

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Looks good to me! Or we can make additional changes to imaging now re: my File comment

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