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Issues list

Can't rednder fragments with multiple external connections
#2778 opened Feb 19, 2025 by jblack-mestre
Saving monomers to SDF v3000 works wrong - system saves every monomer template for every monomer on the canvas (geometry progression) Export to SDF Bucket: Export to SDF related issues Macro-Micro Bucket: Switching between Micro and Macro modes Priority: Low Severity: Low Low level visibility to the user
#2772 opened Feb 17, 2025 by AlexeyGirin Refined Backlog
Add support for Postgres 17
#2767 opened Feb 13, 2025 by Kuppit
Preview: Error occurs on click of "Remove Explicit Hydrogens" in reaction Cascade reactions Priority: High Severity: High High level visibility to the user
#2755 opened Feb 6, 2025 by Zhirnoff Indigo-1.30.0-rc.1 (Current)
Substituents are displayed backwards if appearing on the left of the molecule User`s Feedback
#2748 opened Feb 3, 2025 by jblack-mestre
1
Incorrect substituent position User`s Feedback
#2747 opened Jan 31, 2025 by jblack-mestre
Clean Up function doesn't work if query atom and monomer on the canvas at the same time Layout Priority: Medium Severity: Medium Medium level visibility to the user
#2724 opened Jan 6, 2025 by AlexeyGirin Refined Backlog
The monomer appears expanded after loading file in RXN V2000 format Export to RXN Bucket: Export to RXN related issues Priority: Medium Severity: Medium Medium level visibility to the user
#2723 opened Jan 6, 2025 by Zhirnoff Refined Backlog
Monomer could be saved to RDF V3000 format but can't be loaded back - exception Export to RDF Bucket: Export to RDF Priority: Medium Severity: Medium Medium level visibility to the user
#2722 opened Jan 6, 2025 by Zhirnoff Refined Backlog
Reaction SMILES lossily handles enhanced stereochemistry Export to SMARTS Bucket: Bugs related to Export to SMARTS Stereochemistry Bucket: Stereochemistry related issues User`s Feedback
#2720 opened Jan 2, 2025 by dan2097
2
Mismatch in Oxygen Atom Mapping Between Reactants and Product in Indigo Automapping User`s Feedback
#2719 opened Dec 31, 2024 by RamziWeslati
2
Atom Query feature export: System lost MOST "Substitution count" values Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Mol v2000 Loader Replacement Issues related to replacement Ketcher mol loader with Indigo one Priority: Medium Query features Bucket: Query features related issues Severity: Low Low level visibility to the user
#2707 opened Dec 20, 2024 by AlexeyGirin Indigo-1.30.0-rc.1 (Current)
1
@AliaksandrDziarkach
1
System losts one stereo label if load from MOL Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Mol v2000 Loader Replacement Issues related to replacement Ketcher mol loader with Indigo one Priority: Medium regress found by autotest Severity: Medium Medium level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2704 opened Dec 20, 2024 by AlexeyGirin Indigo-1.30.0-rc.1 (Current)
Unable to save canvas to MOL - system throws an error: Given string could not be loaded as (query or plain) molecule or reaction, see the error messages: 'stereocenters: restorePyramid(): stereocenter has more than 4 neighbors', 'RXN loader: bad header {', 'RXN loader: bad header {', 'stereocenters: restorePyramid(): stereocenter has more than 4 neighbors' Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Mol v2000 Loader Replacement Issues related to replacement Ketcher mol loader with Indigo one Priority: Medium regress found by autotest Severity: Low Low level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2702 opened Dec 20, 2024 by AlexeyGirin Indigo-1.30.0-rc.1 (Current)
1
Data label coordinates got lost if loaded from MOL Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Mol v2000 Loader Replacement Issues related to replacement Ketcher mol loader with Indigo one Priority: Medium regress found by autotest Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2701 opened Dec 20, 2024 by AlexeyGirin Indigo-1.30.0-rc.1 (Current)
1
R Group logic condition is wrong if loaded from MOL Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Mol v2000 Loader Replacement Issues related to replacement Ketcher mol loader with Indigo one Priority: Low regress found by autotest Severity: Low Low level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2699 opened Dec 20, 2024 by AlexeyGirin Indigo-1.30.0-rc.1 (Current)
2
Ketcher sends different set of parameters to indigo in case of Copy/Paste and Layout operation Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: High Severity: Medium Medium level visibility to the user
#2692 opened Dec 2, 2024 by AlexeyGirin Refined Backlog
@even1024
2
Truncating sign "..." isn't presented when reaction's conditions are truncated because of the long name Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Low
#2661 opened Nov 27, 2024 by ivanmaslow Refined Backlog
@even1024
Reaction's name and conditions aren't recognized on save to RDF for single/cascade reaction with simple arrows Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2644 opened Nov 20, 2024 by ivanmaslow Backlog
@even1024
1
This molfile is not rendered User`s Feedback
#2614 opened Nov 5, 2024 by Tigerfink
2
Text above single arrow reaction is not centered MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2609 opened Nov 5, 2024 by Zhirnoff Backlog
@even1024
1
Uppercase text extends beyond the arrow and overlaps with canvas structures MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2607 opened Nov 5, 2024 by Zhirnoff Refined Backlog
Reagents are repositioned above the reaction arrow after saving and loading RXN V2000/V3000 files Export to RXN Bucket: Export to RXN related issues Priority: High regression
#2591 opened Oct 31, 2024 by Zhirnoff Indigo-1.30.0-rc.1 (Current)
Arrows overlap atoms of chemical elements after save/load to/from RDF or layout actions Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2586 opened Oct 25, 2024 by ivanmaslow Refined Backlog
@even1024
The ordering of reactions is changed after Undo/Redo of adding from file and Layout or Save/Load actions to/from RDF Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2585 opened Oct 25, 2024 by ivanmaslow Refined Backlog
@even1024
ProTip! Exclude everything labeled bug with -label:bug.