-
Notifications
You must be signed in to change notification settings - Fork 104
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
01b107c
commit d9f03b8
Showing
10 changed files
with
39 additions
and
39 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
2 changes: 1 addition & 1 deletion
2
utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket
Large diffs are not rendered by default.
Oops, something went wrong.
Large diffs are not rendered by default.
Oops, something went wrong.
2 changes: 1 addition & 1 deletion
2
utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1 @@ | ||
{"root":{"nodes":[{"$ref":"ambiguousMonomer-0"},{"$ref":"ambiguousMonomer-1"}],"templates":[{"$ref":"monomerTemplate-D___Aspartic acid"},{"$ref":"monomerTemplate-N___Asparagine"},{"$ref":"monomerTemplate-I___Isoleucine"},{"$ref":"ambiguousMonomerTemplate-Var0"},{"$ref":"ambiguousMonomerTemplate-Var1"}]},"ambiguousMonomer-0":{"type":"ambiguousMonomer","id":"0","position":{"x":0.000000,"y":-0.000000},"seqid":1,"alias":"Var0","templateId":"Var0"},"ambiguousMonomer-1":{"type":"ambiguousMonomer","id":"1","position":{"x":0.000000,"y":-1.600000},"seqid":2,"alias":"Var1","templateId":"Var1"},"monomerTemplate-D___Aspartic acid":{"type":"monomerTemplate","id":"D___Aspartic acid","class":"AminoAcid","classHELM":"PEPTIDE","fullName":"Aspartic acid","alias":"D","naturalAnalogShort":"D","attachmentPoints":[{"attachmentAtom":3,"type":"left","leavingGroup":{"atoms":[4]}},{"attachmentAtom":0,"type":"right","leavingGroup":{"atoms":[9]}},{"attachmentAtom":8,"type":"side","leavingGroup":{"atoms":[10]}}],"atoms":[{"label":"C","location":[1.631000,-1.557800,0.000000]},{"label":"O","location":[1.632700,-2.739200,0.000000]},{"label":"C","location":[0.350700,-0.820100,0.000000],"stereoLabel":"abs"},{"label":"N","location":[-0.929500,-1.557800,0.000000]},{"label":"H","location":[-1.952500,-0.966900,0.000000]},{"label":"C","location":[0.348500,0.657500,0.000000]},{"label":"C","location":[-0.931700,1.395200,0.000000]},{"label":"O","location":[-1.954200,0.803200,0.000000]},{"label":"O","location":[-0.933500,2.576600,0.000000]},{"label":"O","location":[2.653400,-0.965800,0.000000]},{"label":"H","location":[0.085100,3.175100,0.000000]}],"bonds":[{"type":2,"atoms":[1,0]},{"type":1,"atoms":[0,2]},{"type":1,"atoms":[2,3]},{"type":1,"atoms":[3,4]},{"type":1,"atoms":[2,5],"stereo":1},{"type":1,"atoms":[5,6]},{"type":2,"atoms":[6,7]},{"type":1,"atoms":[6,8]},{"type":1,"atoms":[0,9]},{"type":1,"atoms":[8,10]}]},"monomerTemplate-N___Asparagine":{"type":"monomerTemplate","id":"N___Asparagine","class":"AminoAcid","classHELM":"PEPTIDE","fullName":"Asparagine","alias":"N","naturalAnalogShort":"N","attachmentPoints":[{"attachmentAtom":3,"type":"left","leavingGroup":{"atoms":[4]}},{"attachmentAtom":0,"type":"right","leavingGroup":{"atoms":[9]}},{"attachmentAtom":7,"type":"side","leavingGroup":{"atoms":[10]}}],"atoms":[{"label":"C","location":[1.892900,-1.417500,0.000000]},{"label":"O","location":[1.894700,-2.598900,0.000000]},{"label":"C","location":[0.612700,-0.679900,0.000000],"stereoLabel":"abs"},{"label":"N","location":[-0.667600,-1.417500,0.000000]},{"label":"H","location":[-1.690700,-0.826600,0.000000]},{"label":"C","location":[0.610400,0.797800,0.000000]},{"label":"C","location":[-0.669800,1.535400,0.000000]},{"label":"N","location":[-1.692200,0.943400,0.000000]},{"label":"O","location":[-0.671600,2.716800,0.000000]},{"label":"O","location":[2.915300,-0.825500,0.000000]},{"label":"H","location":[-2.534100,1.772400,0.000000]}],"bonds":[{"type":2,"atoms":[1,0]},{"type":1,"atoms":[0,2]},{"type":1,"atoms":[2,3]},{"type":1,"atoms":[3,4]},{"type":1,"atoms":[2,5],"stereo":1},{"type":1,"atoms":[5,6]},{"type":1,"atoms":[6,7]},{"type":2,"atoms":[6,8]},{"type":1,"atoms":[0,9]},{"type":1,"atoms":[7,10]}]},"monomerTemplate-I___Isoleucine":{"type":"monomerTemplate","id":"I___Isoleucine","class":"AminoAcid","classHELM":"PEPTIDE","fullName":"Isoleucine","alias":"I","naturalAnalogShort":"I","attachmentPoints":[{"attachmentAtom":3,"type":"left","leavingGroup":{"atoms":[4]}},{"attachmentAtom":5,"type":"right","leavingGroup":{"atoms":[7]}}],"atoms":[{"label":"C","location":[-1.255700,1.668100,0.000000]},{"label":"C","location":[0.024500,0.930400,0.000000],"stereoLabel":"abs"},{"label":"C","location":[0.026800,-0.547200,0.000000],"stereoLabel":"abs"},{"label":"N","location":[-1.253600,-1.284900,0.000000]},{"label":"H","location":[-2.276600,-0.694000,0.000000]},{"label":"C","location":[1.306900,-1.284900,0.000000]},{"label":"O","location":[1.308600,-2.466400,0.000000]},{"label":"O","location":[2.329400,-0.693000,0.000000]},{"label":"C","location":[1.047000,1.522300,0.000000]},{"label":"C","location":[-1.257400,2.849500,0.000000]}],"bonds":[{"type":1,"atoms":[0,1]},{"type":1,"atoms":[2,1],"stereo":1},{"type":1,"atoms":[2,3]},{"type":1,"atoms":[3,4]},{"type":1,"atoms":[2,5]},{"type":2,"atoms":[5,6]},{"type":1,"atoms":[5,7]},{"type":1,"atoms":[1,8],"stereo":6},{"type":1,"atoms":[0,9]}]},"ambiguousMonomerTemplate-Var0":{"type":"ambiguousMonomerTemplate","subtype":"alternatives","id":"Var0","alias":"Var0","options":[{"templateId":"D___Aspartic acid"},{"templateId":"N___Asparagine"},{"templateId":"I___Isoleucine"}]},"ambiguousMonomerTemplate-Var1":{"type":"ambiguousMonomerTemplate","subtype":"mixture","id":"Var1","alias":"Var1","options":[{"templateId":"D___Aspartic acid"},{"templateId":"N___Asparagine"},{"templateId":"I___Isoleucine"}]}} | ||
{"root":{"nodes":[{"$ref":"ambiguousMonomer-0"},{"$ref":"ambiguousMonomer-1"}],"templates":[{"$ref":"monomerTemplate-D___Aspartic acid"},{"$ref":"monomerTemplate-N___Asparagine"},{"$ref":"monomerTemplate-I___Isoleucine"},{"$ref":"ambiguousMonomerTemplate-Var0"},{"$ref":"ambiguousMonomerTemplate-Var1"}]},"ambiguousMonomer-0":{"type":"ambiguousMonomer","id":"0","position":{"x":0.000000,"y":-0.000000},"seqid":1,"alias":"Var0","templateId":"Var0"},"ambiguousMonomer-1":{"type":"ambiguousMonomer","id":"1","position":{"x":0.000000,"y":-1.000000},"seqid":2,"alias":"Var1","templateId":"Var1"},"monomerTemplate-D___Aspartic acid":{"type":"monomerTemplate","id":"D___Aspartic acid","class":"AminoAcid","classHELM":"PEPTIDE","fullName":"Aspartic acid","alias":"D","naturalAnalogShort":"D","attachmentPoints":[{"attachmentAtom":3,"type":"left","leavingGroup":{"atoms":[4]}},{"attachmentAtom":0,"type":"right","leavingGroup":{"atoms":[9]}},{"attachmentAtom":8,"type":"side","leavingGroup":{"atoms":[10]}}],"atoms":[{"label":"C","location":[1.631000,-1.557800,0.000000]},{"label":"O","location":[1.632700,-2.739200,0.000000]},{"label":"C","location":[0.350700,-0.820100,0.000000],"stereoLabel":"abs"},{"label":"N","location":[-0.929500,-1.557800,0.000000]},{"label":"H","location":[-1.952500,-0.966900,0.000000]},{"label":"C","location":[0.348500,0.657500,0.000000]},{"label":"C","location":[-0.931700,1.395200,0.000000]},{"label":"O","location":[-1.954200,0.803200,0.000000]},{"label":"O","location":[-0.933500,2.576600,0.000000]},{"label":"O","location":[2.653400,-0.965800,0.000000]},{"label":"H","location":[0.085100,3.175100,0.000000]}],"bonds":[{"type":2,"atoms":[1,0]},{"type":1,"atoms":[0,2]},{"type":1,"atoms":[2,3]},{"type":1,"atoms":[3,4]},{"type":1,"atoms":[2,5],"stereo":1},{"type":1,"atoms":[5,6]},{"type":2,"atoms":[6,7]},{"type":1,"atoms":[6,8]},{"type":1,"atoms":[0,9]},{"type":1,"atoms":[8,10]}]},"monomerTemplate-N___Asparagine":{"type":"monomerTemplate","id":"N___Asparagine","class":"AminoAcid","classHELM":"PEPTIDE","fullName":"Asparagine","alias":"N","naturalAnalogShort":"N","attachmentPoints":[{"attachmentAtom":3,"type":"left","leavingGroup":{"atoms":[4]}},{"attachmentAtom":0,"type":"right","leavingGroup":{"atoms":[9]}},{"attachmentAtom":7,"type":"side","leavingGroup":{"atoms":[10]}}],"atoms":[{"label":"C","location":[1.892900,-1.417500,0.000000]},{"label":"O","location":[1.894700,-2.598900,0.000000]},{"label":"C","location":[0.612700,-0.679900,0.000000],"stereoLabel":"abs"},{"label":"N","location":[-0.667600,-1.417500,0.000000]},{"label":"H","location":[-1.690700,-0.826600,0.000000]},{"label":"C","location":[0.610400,0.797800,0.000000]},{"label":"C","location":[-0.669800,1.535400,0.000000]},{"label":"N","location":[-1.692200,0.943400,0.000000]},{"label":"O","location":[-0.671600,2.716800,0.000000]},{"label":"O","location":[2.915300,-0.825500,0.000000]},{"label":"H","location":[-2.534100,1.772400,0.000000]}],"bonds":[{"type":2,"atoms":[1,0]},{"type":1,"atoms":[0,2]},{"type":1,"atoms":[2,3]},{"type":1,"atoms":[3,4]},{"type":1,"atoms":[2,5],"stereo":1},{"type":1,"atoms":[5,6]},{"type":1,"atoms":[6,7]},{"type":2,"atoms":[6,8]},{"type":1,"atoms":[0,9]},{"type":1,"atoms":[7,10]}]},"monomerTemplate-I___Isoleucine":{"type":"monomerTemplate","id":"I___Isoleucine","class":"AminoAcid","classHELM":"PEPTIDE","fullName":"Isoleucine","alias":"I","naturalAnalogShort":"I","attachmentPoints":[{"attachmentAtom":3,"type":"left","leavingGroup":{"atoms":[4]}},{"attachmentAtom":5,"type":"right","leavingGroup":{"atoms":[7]}}],"atoms":[{"label":"C","location":[-1.255700,1.668100,0.000000]},{"label":"C","location":[0.024500,0.930400,0.000000],"stereoLabel":"abs"},{"label":"C","location":[0.026800,-0.547200,0.000000],"stereoLabel":"abs"},{"label":"N","location":[-1.253600,-1.284900,0.000000]},{"label":"H","location":[-2.276600,-0.694000,0.000000]},{"label":"C","location":[1.306900,-1.284900,0.000000]},{"label":"O","location":[1.308600,-2.466400,0.000000]},{"label":"O","location":[2.329400,-0.693000,0.000000]},{"label":"C","location":[1.047000,1.522300,0.000000]},{"label":"C","location":[-1.257400,2.849500,0.000000]}],"bonds":[{"type":1,"atoms":[0,1]},{"type":1,"atoms":[2,1],"stereo":1},{"type":1,"atoms":[2,3]},{"type":1,"atoms":[3,4]},{"type":1,"atoms":[2,5]},{"type":2,"atoms":[5,6]},{"type":1,"atoms":[5,7]},{"type":1,"atoms":[1,8],"stereo":6},{"type":1,"atoms":[0,9]}]},"ambiguousMonomerTemplate-Var0":{"type":"ambiguousMonomerTemplate","subtype":"alternatives","id":"Var0","alias":"Var0","options":[{"templateId":"D___Aspartic acid"},{"templateId":"N___Asparagine"},{"templateId":"I___Isoleucine"}]},"ambiguousMonomerTemplate-Var1":{"type":"ambiguousMonomerTemplate","subtype":"mixture","id":"Var1","alias":"Var1","options":[{"templateId":"D___Aspartic acid"},{"templateId":"N___Asparagine"},{"templateId":"I___Isoleucine"}]}} |
Oops, something went wrong.