#1277 SMILES with bad stereochemistry is not parsed #2878
even1024indigo-ci.yaml
on: pull_request
static_analysis
2m 37s
Matrix: build_indigo_libs_aarch64
Matrix: build_indigo_libs_i386
Matrix: build_indigo_libs_x86_64
build_indigo_windows_mingw_x86_64
14m 5s
build_indigo_ketcher_cjk
32m 40s
build_bingo_oracle_linux_x86_64
4m 30s
build_bingo_oracle_windows_mingw_x86_64
8m 22s
build_bingo_oracle_windows_msvc_x86_64
9m 22s
Matrix: build_bingo_postgres_linux_x86_64
Matrix: build_bingo_postgres_macos_x86_64
Matrix: build_bingo_postgres_windows_msvc_x86_64
Matrix: build_bingo_sqlserver_windows_msvc_x86_64
Matrix: build_indigo_utils_x86_64
Matrix: build_indigo_wrappers
Matrix: test_bingo_elastic_java_linux_x86_64
Matrix: test_bingo_elastic_python_linux_x86_64
Matrix: test_indigo_dotnet_i386
Matrix: test_indigo_dotnet_x86_64
Matrix: test_indigo_java_aarch64
Matrix: test_indigo_java_i386
Matrix: test_indigo_java_x86_64
Matrix: test_indigo_python_aarch64
Matrix: test_indigo_python_i386
Matrix: test_indigo_python_x86_64
build_test_publish_indigo_service_old
2m 6s
build_test_publish_indigo_service_new
3m 38s
publish_indigo_to_pypi
0s
publish_indigo_to_nuget
0s
publish_indigo_to_npm
0s
publish_indigo_to_maven
0s
Annotations
255 errors and 19 warnings
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TestCml.test_cml[1208-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1994-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1995-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1997-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestGross.test_gross[1208-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1994-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1995-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1997-None]:
TestGross#L1
AssertionError
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TestMarkush.test_markush[5-expected1]:
TestMarkush#L1
AssertionError
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TestMass.test_molecular_weight[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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build_bingo_postgres_linux_x86_64 (15)
Process completed with exit code 1.
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TestCml.test_cml[1208-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1994-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1995-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1997-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestGross.test_gross[1208-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1994-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1995-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1997-None]:
TestGross#L1
AssertionError
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TestMarkush.test_markush[5-expected1]:
TestMarkush#L1
AssertionError
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TestMass.test_molecular_weight[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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build_bingo_postgres_linux_x86_64 (11)
Process completed with exit code 1.
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TestCml.test_cml[1208-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1994-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1995-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1997-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestGross.test_gross[1208-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1994-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1995-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1997-None]:
TestGross#L1
AssertionError
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TestMarkush.test_markush[5-expected1]:
TestMarkush#L1
AssertionError
|
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TestMass.test_molecular_weight[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_molecular_weight[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_most_abundant_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_most_abundant_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_most_abundant_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_most_abundant_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_monoisotopic_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_monoisotopic_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_monoisotopic_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_monoisotopic_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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build_bingo_postgres_linux_x86_64 (14)
Process completed with exit code 1.
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TestCml.test_cml[1208-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1994-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1995-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1997-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestGross.test_gross[1208-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1994-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1995-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1997-None]:
TestGross#L1
AssertionError
|
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TestMarkush.test_markush[5-expected1]:
TestMarkush#L1
AssertionError
|
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TestMass.test_molecular_weight[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_molecular_weight[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_molecular_weight[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_molecular_weight[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_most_abundant_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_most_abundant_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_most_abundant_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_most_abundant_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_monoisotopic_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_monoisotopic_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_monoisotopic_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_monoisotopic_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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build_bingo_postgres_linux_x86_64 (13)
Process completed with exit code 1.
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TestCml.test_cml[1208-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1994-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1995-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestCml.test_cml[1997-None\n]:
TestCml#L1
File "<string>", line 1
lxml.etree.XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
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TestGross.test_gross[1208-None]:
TestGross#L1
AssertionError
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TestGross.test_gross[1994-None]:
TestGross#L1
AssertionError
|
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TestGross.test_gross[1995-None]:
TestGross#L1
AssertionError
|
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TestGross.test_gross[1997-None]:
TestGross#L1
AssertionError
|
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TestMarkush.test_markush[5-expected1]:
TestMarkush#L1
AssertionError
|
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TestMass.test_molecular_weight[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_molecular_weight[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_molecular_weight[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_molecular_weight[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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TestMass.test_most_abundant_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
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TestMass.test_most_abundant_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_most_abundant_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_most_abundant_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_monoisotopic_mass[1208-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_monoisotopic_mass[1994-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_monoisotopic_mass[1995-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
|
|
TestMass.test_monoisotopic_mass[1997-None]:
TestMass#L1
TypeError: type NoneType doesn't define __round__ method
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build_bingo_postgres_linux_x86_64 (12)
Process completed with exit code 1.
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build_bingo_postgres_linux_x86_64 (15)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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build_bingo_postgres_linux_x86_64 (11)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
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build_bingo_postgres_linux_x86_64 (14)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
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build_bingo_postgres_linux_x86_64 (13)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
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build_bingo_postgres_linux_x86_64 (12)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
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test_indigo_java_i386 (windows)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
|
test_indigo_python_i386 (windows)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
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test_indigo_python_aarch64 (ubuntu)
The following actions uses node12 which is deprecated and will be forced to run on node16: uraimo/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
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test_bingo_elastic_python_linux_x86_64 (3.10)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_bingo_elastic_python_linux_x86_64 (3.10)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_bingo_elastic_python_linux_x86_64 (3.10)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_bingo_elastic_python_linux_x86_64 (3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_bingo_elastic_python_linux_x86_64 (3.7)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_bingo_elastic_python_linux_x86_64 (3.7)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_indigo_java_aarch64 (ubuntu)
The following actions uses node12 which is deprecated and will be forced to run on node16: uraimo/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
|
test_bingo_elastic_java_linux_x86_64 (1.11)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_bingo_elastic_java_linux_x86_64 (1.8)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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build_indigo_ketcher
The following actions uses node12 which is deprecated and will be forced to run on node16: mymindstorm/setup-emsdk@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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build_indigo_ketcher_cjk
The following actions uses node12 which is deprecated and will be forced to run on node16: mymindstorm/setup-emsdk@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
|
bingo-elastic-python
Expired
|
33.7 MB |
|
|
bingo-oracle-linux-x86_64
Expired
|
3.69 MB |
|
|
bingo-oracle-windows-mingw-x86_64
Expired
|
3.78 MB |
|
|
bingo-oracle-windows-msvc-x86_64
Expired
|
2.06 MB |
|
|
bingo-postgres-11-linux-x86_64
Expired
|
3.72 MB |
|
|
bingo-postgres-11-macos-x86_64
Expired
|
2.7 MB |
|
|
bingo-postgres-11-windows-x86_64
Expired
|
2.03 MB |
|
|
bingo-postgres-12-linux-x86_64
Expired
|
3.72 MB |
|
|
bingo-postgres-12-macos-x86_64
Expired
|
2.7 MB |
|
|
bingo-postgres-12-windows-x86_64
Expired
|
2.03 MB |
|
|
bingo-postgres-13-linux-x86_64
Expired
|
3.71 MB |
|
|
bingo-postgres-13-macos-x86_64
Expired
|
2.7 MB |
|
|
bingo-postgres-13-windows-x86_64
Expired
|
2.02 MB |
|
|
bingo-postgres-14-linux-x86_64
Expired
|
3.71 MB |
|
|
bingo-postgres-14-macos-x86_64
Expired
|
2.7 MB |
|
|
bingo-postgres-14-windows-x86_64
Expired
|
2.02 MB |
|
|
bingo-postgres-15-linux-x86_64
Expired
|
3.71 MB |
|
|
bingo-postgres-15-macos-x86_64
Expired
|
2.7 MB |
|
|
bingo-postgres-15-windows-x86_64
Expired
|
2.02 MB |
|
|
bingo-sqlserver-windows-x86_64
Expired
|
1.98 MB |
|
|
indigo-dotnet
Expired
|
33.5 MB |
|
|
indigo-java
Expired
|
67.1 MB |
|
|
indigo-ketcher
Expired
|
3.68 MB |
|
|
indigo-ketcher-cjk
Expired
|
20.1 MB |
|
|
indigo-libs-linux-aarch64
Expired
|
16.8 MB |
|
|
indigo-libs-linux-x86_64
Expired
|
17.9 MB |
|
|
indigo-libs-macos-aarch64
Expired
|
10.7 MB |
|
|
indigo-libs-macos-x86_64
Expired
|
11.4 MB |
|
|
indigo-libs-windows-i386
Expired
|
13.1 MB |
|
|
indigo-libs-windows-mingw-x86_64
Expired
|
72.6 MB |
|
|
indigo-libs-windows-x86_64
Expired
|
13.9 MB |
|
|
indigo-native-shared-libs
Expired
|
83.9 MB |
|
|
indigo-python
Expired
|
33.7 MB |
|
|
indigo-utils-linux-x86_64
Expired
|
30.3 MB |
|
|
indigo-utils-macos-x86_64
Expired
|
26.1 MB |
|
|
indigo-utils-windows-x86_64
Expired
|
17.2 MB |
|