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@ding-lab

Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

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  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 126 55

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 97 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 60 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 45 25

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 43 14

  6. GenomeVIP GenomeVIP Public

    PHP 20 5

Repositories

Showing 10 of 134 repositories
  • mushroom Public

    A computational tool for identification of 3D multi-modal spatial neighborhoods

    ding-lab/mushroom’s past year of commit activity
    Jupyter Notebook 6 MIT 0 0 0 Updated Nov 15, 2024
  • importGDC Public

    Automated download of CPTAC3 data from GDC

    ding-lab/importGDC’s past year of commit activity
    Shell 2 0 0 0 Updated Nov 13, 2024
  • druggability_databases Public
    ding-lab/druggability_databases’s past year of commit activity
    Python 1 0 0 0 Updated Nov 10, 2024
  • CromwellRunner Public

    Scripts for managing Cromwell workflows

    ding-lab/CromwellRunner’s past year of commit activity
    Shell 1 GPL-3.0 0 0 0 Updated Nov 4, 2024
  • GDC.case.discover Public

    Obtain submitted reads and clinical info associated with CPTAC3 cases

    ding-lab/GDC.case.discover’s past year of commit activity
    Shell 1 GPL-3.0 2 0 0 Updated Oct 25, 2024
  • rcwrapper Public

    calculate vaf for variants based on bam

    ding-lab/rcwrapper’s past year of commit activity
    Perl 0 0 0 0 Updated Oct 24, 2024
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper’s past year of commit activity
    Perl 15 AGPL-3.0 6 0 0 Updated Oct 2, 2024
  • SomaticSV Public

    CWL wrapper for Manta 1.4.0 and simple filter

    ding-lab/SomaticSV’s past year of commit activity
    Shell 3 GPL-3.0 1 0 0 Updated Aug 30, 2024
  • ST_subclone_publication Public

    Code for spatial subclone paper

    ding-lab/ST_subclone_publication’s past year of commit activity
    R 3 2 0 0 Updated Aug 29, 2024
  • PanCan_snATAC_publication Public
    ding-lab/PanCan_snATAC_publication’s past year of commit activity
    Jupyter Notebook 13 4 2 0 Updated Aug 4, 2024
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