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@daisybio

Data Science in Systems Biology

The research group Data Science in Systems Biology at the School of Life Sciences, Technical University of Munich

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  1. OpenLabFramework OpenLabFramework Public archive

    A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth

    JavaScript 21 6

  2. data-leakage-ppi-prediction data-leakage-ppi-prediction Public

    Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'

    C++ 20 1

  3. TF-Prioritizer TF-Prioritizer Public

    Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

    Java 13

  4. SPONGE SPONGE Public

    Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference

    R 11 9

  5. BiCoN BiCoN Public

    Network Constrained Biclustering PyPI package

    Python 10 2

  6. namco namco Public

    R 9 2

Repositories

Showing 10 of 85 repositories
  • drevalpy Public

    DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

    daisybio/drevalpy’s past year of commit activity
    Python 5 GPL-3.0 1 21 (1 issue needs help) 3 Updated Dec 13, 2024
  • daisybio/SPONGE-web-backend’s past year of commit activity
    Python 0 GPL-3.0 0 0 5 Updated Dec 13, 2024
  • daisybio/SPONGE-web-frontend’s past year of commit activity
    TypeScript 0 GPL-3.0 0 1 2 Updated Dec 13, 2024
  • DIGGER Public Forked from louadi/DIGGER

    Fork for developing Digger 2.0

    daisybio/DIGGER’s past year of commit activity
    Python 0 GPL-3.0 3 5 (1 issue needs help) 0 Updated Dec 13, 2024
  • namco Public
    daisybio/namco’s past year of commit activity
    R 9 GPL-3.0 2 23 0 Updated Dec 12, 2024
  • SPONGE-web-R Public
    daisybio/SPONGE-web-R’s past year of commit activity
    R 0 0 0 0 Updated Dec 11, 2024
  • spongeWebPy Public
    daisybio/spongeWebPy’s past year of commit activity
    Python 0 0 0 3 Updated Dec 11, 2024
  • DysRegNet_package Public

    Inferring patient-specific regulatory alterations

    daisybio/DysRegNet_package’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 2 0 0 Updated Dec 6, 2024
  • daisybio/PPI_prediction_study’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Dec 5, 2024
  • NeEDL Public
    daisybio/NeEDL’s past year of commit activity
    C++ 4 GPL-3.0 1 5 3 Updated Dec 4, 2024