Merge branch 'master' of https://github.com/btmartin721/SNPio

btmartin721 · Oct 25, 2024 · 72904d2 · 72904d2
2 parents a86ba0c + 7f28ba5
commit 72904d2
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Showing 88 changed files with 39,773 additions and 8,922 deletions.
diff --git a/.gitignore b/.gitignore
@@ -162,6 +162,19 @@ profile_stats_*.txt
 # pipenv
 #Pipfile.lock
 
+data_sorted.txt
+data.txt
+header.txt
+
+snpio_filtered_output/
+
+vcf_output/
+
+.vscode/
+
+logs/
+_minted-input
+
 header.txt
 keybindings.json
 tasks.json

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
@@ -10,7 +10,7 @@ version: 2
 build:
   os: "ubuntu-20.04"
   tools:
-    python: "3.9"
+    python: "3.11"
 
 # Sphinx documentation options
 sphinx:

diff --git a/.vscode/launch.json b/.vscode/launch.json
@@ -3,7 +3,7 @@
     "configurations": [
         {
             "name": "Python: Debug run_snpio.py",
-            "type": "python",
+            "type": "debugpy",
             "request": "launch",
             "program": "${workspaceFolder}/run_snpio.py",
             "console": "integratedTerminal",

diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -4,5 +4,16 @@
     "editor.defaultFormatter": "vscode.json-language-features"
   },
   "python.analysis.autoFormatStrings": true,
-  "python.analysis.autoImportCompletions": true
+  "python.analysis.autoImportCompletions": true,
+  "python.testing.unittestArgs": [
+    "-v",
+    "-s",
+    "./tests",
+    "-p",
+    "test*.py"
+  ],
+  "python.testing.pytestEnabled": true,
+  "python.testing.unittestEnabled": false,
+  "python.defaultInterpreterPath": "C:/Users/evobi/Documents/SNPio/.snpio-dev/bin/python",
+  "python.REPL.enableREPLSmartSend": false,
 }