Skip to content

v0.5.33

Compare
Choose a tag to compare
@github-actions github-actions released this 20 Jul 19:58
· 0 commits to 3ca9a7e7b1ece85b11866eaab313691033db2750 since this release

Fixed issues in segment with bulk libraries. (#141)

  • Fixed issues in segment with bulk libraries.
  • Added better logging in segment for model annotations.
  • segment now cues off the model annotation_segments for what annotations are required on output.
  • segment now has repeatable order for it tag output (READ_CLIPPED_SEQS_LIST_TAG)
  • Split bam_utils.has_cbc_and_umi into two methods.
  • Added two new tags for demultiplexing indices in bulk (and other) libraries.
  • Now LibraryModel.has_umi_annotation will cue off of both the raw and final UMI tags.
  • Now LibraryModel.has_cell_barcode_annotation will cue off of both the raw and final CBC tags.
  • Updated all models that annotate UMIs to annotate both the final and raw UMI tags.
  • Fixed typo in the mas_15_bulk_10x5p_single_internal array_element_structure.
  • Updated tests for segment to validate against expected output for 3 models (mas_15_bulk_10x5p_single_internal, mas_10_sc_10x5p_single_none, mas_15_sc_10x5p_single_none).
  • Added unit test file for the model.