lrp_4.0.33
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released this
12 Dec 04:57
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0 commits
to 5c2052327f8febd511ba84a313f505d9644552cb
since this release
SRJointCallGVCFsWithGenomicsDB.wdl
now prefers dbsnp_vcf
to known_sites_vcf
for genotyping (#480)
- Added ResolveMapKeysInPriorityOrder to resolve keys in a WDL Map object in priority order. This enables fallbacks / preferences for different entries in a map (such as the refmap).
- For genotyping with the gnarly genotyper, the dbsnp resource now prefers dbsnp_vcf from the RefMap. If this does not exist, it will fall back to known_sites_vcf. This allows different resources to be used for BQSR (which prefers known_sites_vcf in SRFlowcell) and the gnarly genotyper, which now prefers dbsnp_vcf.