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lrp_4.0.23

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@github-actions github-actions released this 26 Aug 18:31
· 0 commits to 52868a8ddd2038e065c09c3612fd5fa669ac3463 since this release

Updated drug resistance marker code to account for het genotypes. (#467)

  • Updated drug resistance marker code.
  • Now PfalciparumTypeDrugResistanceMarkers::CallDrugResistanceMutations pulls info directly from
    the VCF file using pysam, rather than a series of shell commands.
  • Now PfalciparumTypeDrugResistanceMarkers::CallDrugResistanceMutations preserves het/hom
    genotype information in the raw output file.
  • PfalciparumDrugResistanceSummary.wdl now calls into
    PfalciparumTypeDrugResistanceMarkers for
    CreateDrugResistanceSummary.
  • Minor refactoring of names.
  • Added VCF Index as input to PfalciparumTypeDrugResistanceMarkers.wdl
  • Fixed output names in PfalciparumDrugResistanceSummary.wdl.