lrp_4.0.23
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released this
26 Aug 18:31
·
0 commits
to 52868a8ddd2038e065c09c3612fd5fa669ac3463
since this release
Updated drug resistance marker code to account for het
genotypes. (#467)
- Updated drug resistance marker code.
- Now
PfalciparumTypeDrugResistanceMarkers::CallDrugResistanceMutations
pulls info directly from
the VCF file using pysam, rather than a series of shell commands. - Now
PfalciparumTypeDrugResistanceMarkers::CallDrugResistanceMutations
preserves het/hom
genotype information in the raw output file. PfalciparumDrugResistanceSummary.wdl
now calls into
PfalciparumTypeDrugResistanceMarkers
for
CreateDrugResistanceSummary
.- Minor refactoring of names.
- Added VCF Index as input to
PfalciparumTypeDrugResistanceMarkers.wdl
- Fixed output names in
PfalciparumDrugResistanceSummary.wdl
.