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Fixed typo in output file names CI #5651: Commit d97390c pushed by jonn-smith
January 29, 2025 16:00 8m 52s jts_deeptrio
jts_deeptrio
January 29, 2025 16:00 8m 52s
Added system deps in nightly test CI #5650: Commit a89bec2 pushed by bshifaw
January 28, 2025 14:22 9m 3s bs_tox_fix_nightly
bs_tox_fix_nightly
January 28, 2025 14:22 9m 3s
Gave more space to DeepTrio. CI #5649: Commit e089804 pushed by jonn-smith
January 28, 2025 13:38 10m 50s jts_deeptrio
jts_deeptrio
January 28, 2025 13:38 10m 50s
Added DeepTrio workflow to .dockstore.yml CI #5648: Commit e251dd4 pushed by jonn-smith
January 27, 2025 22:13 9m 20s jts_deeptrio
jts_deeptrio
January 27, 2025 22:13 9m 20s
Made MarkDuplicates optional to enable Amplicon data processing. CI #5647: Commit f7c708d pushed by jonn-smith
January 27, 2025 21:44 15m 44s jts_optional_mark_duplicates
jts_optional_mark_duplicates
January 27, 2025 21:44 15m 44s
Added DeepTrio wdl with workflow to call DeepTrio. CI #5646: Commit 549792a pushed by jonn-smith
January 27, 2025 21:44 16m 0s jts_deeptrio
jts_deeptrio
January 27, 2025 21:44 16m 0s
Added system deps and pip caching to cd.yml CI #5645: Commit b9c0770 pushed by bshifaw
January 27, 2025 20:13 9m 25s bs_update_ci_py
bs_update_ci_py
January 27, 2025 20:13 9m 25s
removed miniconda step, replaced the system dep installation step CI #5644: Commit 3875303 pushed by bshifaw
January 27, 2025 19:59 15m 48s bs_update_ci_py
bs_update_ci_py
January 27, 2025 19:59 15m 48s
created seperate step for system deps, added step to make sure minico… CI #5643: Commit 6731f25 pushed by bshifaw
January 27, 2025 19:37 12s bs_update_ci_py
bs_update_ci_py
January 27, 2025 19:37 12s
Added DeepTrio wdl with workflow to call DeepTrio. CI #5642: Commit 5490583 pushed by jonn-smith
January 27, 2025 19:29 24s jts_deeptrio
jts_deeptrio
January 27, 2025 19:29 24s
Added DeepTrio task to DeepVariant.wdl CI #5641: Commit 804ec0a pushed by jonn-smith
January 27, 2025 19:25 35s jts_deeptrio
jts_deeptrio
January 27, 2025 19:25 35s
update tox py version from py37 to 313 CI #5640: Commit 4198424 pushed by bshifaw
January 27, 2025 19:19 13m 36s bs_update_ci_py
bs_update_ci_py
January 27, 2025 19:19 13m 36s
Added additional deps in "Install dependencies" CI #5639: Commit 1ac0262 pushed by bshifaw
January 27, 2025 19:05 5m 40s bs_update_ci_py
bs_update_ci_py
January 27, 2025 19:05 5m 40s
Install libbz2-dev in deps CI #5638: Commit 8611562 pushed by bshifaw
January 27, 2025 19:01 45s bs_update_ci_py
bs_update_ci_py
January 27, 2025 19:01 45s
Update python setup action version from 4 to 5 CI #5637: Commit 5360e2a pushed by bshifaw
January 27, 2025 18:56 44s bs_update_ci_py
bs_update_ci_py
January 27, 2025 18:56 44s
Update python setup action version from 2 to 4 CI #5636: Commit 6481a95 pushed by bshifaw
January 27, 2025 18:50 43s bs_update_ci_py
bs_update_ci_py
January 27, 2025 18:50 43s
Updated python version in git actions from 3.7 to 3.13 CI #5635: Commit a212239 pushed by bshifaw
January 27, 2025 16:49 50s bs_update_ci_py
bs_update_ci_py
January 27, 2025 16:49 50s
Made MarkDuplicates optional to enable Amplicon data processing. CI #5634: Commit 8058fdc pushed by jonn-smith
January 24, 2025 17:04 26s jts_optional_mark_duplicates
jts_optional_mark_duplicates
January 24, 2025 17:04 26s
for four oddballs t2t shard-8 (2), hg38 shard-3 (2) CI #5633: Commit e07d4ad pushed by SHuang-Broad
January 22, 2025 14:42 24s sh_update_wgs_callers_outliers
sh_update_wgs_callers_outliers
January 22, 2025 14:42 24s
Adapted contamination estimation workflow and BAMutils workflow for s… CI #5632: Commit b090a4a pushed by shadizaheri
January 3, 2025 22:03 9m 8s sz_short_read_contamination
sz_short_read_contamination
January 3, 2025 22:03 9m 8s
Fixed typo in zarr output file. CI #5631: Commit 28208dc pushed by jonn-smith
December 18, 2024 21:28 9m 5s jts_fix_zarr_out_typo
jts_fix_zarr_out_typo
December 18, 2024 21:28 9m 5s
Made zarr conversion optional in SRJointCallGVCFsWithGenomicsDB.wdl CI #5630: Commit 11ec217 pushed by jonn-smith
December 18, 2024 16:07 8m 55s jts_joint_call_zarr_optional
jts_joint_call_zarr_optional
December 18, 2024 16:07 8m 55s
Update AnnotateVCFInsRM.wdl CI #5629: Commit 6908b6e pushed by yuliamostovoy
December 13, 2024 04:39 4m 39s ym_testing
ym_testing
December 13, 2024 04:39 4m 39s
Added snpeff_db_identifier for Functional annotation. CI #5628: Commit 4053567 pushed by jonn-smith
December 13, 2024 01:40 9m 3s jts_functional_annotation_species_fix
jts_functional_annotation_species_fix
December 13, 2024 01:40 9m 3s
add shapeit4 pipeline for hidive experiment CI #5627: Commit 98e8ada pushed by hangsuUNC
December 12, 2024 19:23 7m 18s hangsu_phasing_new
hangsu_phasing_new
December 12, 2024 19:23 7m 18s