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Issues list

Funcotator gnomAD incoherent number of output fields
#8858 opened Jun 3, 2024 by gokalpcelik
@jonn-smith
funcotator hg19 database 1.6 vs 1.7 - EGFR annotated with wrong ENST in 1.7 , but correct in 1.6 Funcotator
#8403 opened Jul 6, 2023 by DanielAmsel
@jonn-smith
5
Funcotator keep running but no results or com.google.cloud.storage Connection reset Funcotator
#8275 opened Mar 31, 2023 by kaixinxiaonvwa-hub
@jonn-smith
2
Funcotator: adding a catch Funcotator
#7936 opened Jul 12, 2022 by jkobject • Review required
@jonn-smith
10
FilterFuncotations Error, ShouldNeverReachHereException, FuncotationMap bug Funcotator
#7865 opened May 20, 2022 by GATKSupportTeam
@jonn-smith
5
Funcotator: yet another hg19 / b37 conversion bug! bug Funcotator PRIORITY_HIGH
#7761 opened Apr 6, 2022 by jonn-smith
@jonn-smith
2
FuncotateSegments java.lang.IllegalArgumentException: Invalid interval in FuncotateSegments bug Funcotator
#7676 opened Feb 16, 2022 by GATKSupportTeam
@jonn-smith
1
Funcotator feature request: custom prioritization order for mutation types community-request Funcotator
#7631 opened Jan 10, 2022 by droazen
@jonn-smith
1
Feature Request - extract Funcotator VCF INFO 'sub-fields' community-request Funcotator
#7556 opened Nov 9, 2021 by GATKSupportTeam
@jonn-smith
1
Created FuncotatorDataSourceBundler Tool
#7427 opened Aug 19, 2021 by haileypfox • Review required
@jonn-smith
95
Funcotator doc updates: produces TCGA MAF files, not GDC MAF files Documentation Funcotator
#7424 opened Aug 18, 2021 by jonn-smith
@jonn-smith
2
IndexFeatureFile using GencodeGtfCodec fails for GENCODE v38 Funcotator
#7385 opened Aug 2, 2021 by robby81
@jonn-smith @jamesemery
8
Remove slow java constructs from Funcotator code Funcotator performance
#7372 opened Jul 27, 2021 by jonn-smith
@jonn-smith @haileypfox
My DepthofCoverage output is empty with PacBio reads longread related to long read tools
#7332 opened Jun 29, 2021 by WanessaMGoes
@jonn-smith
2
Funcotator germline v1.6 datasources protein predictions seem to be wrong for some variants Funcotator PRIORITY_HIGH
#7265 opened May 20, 2021 by jonn-smith
@jonn-smith
2
Funcotator keep running without error but no results Funcotator
#7135 opened Mar 9, 2021 by qindan2008
@jonn-smith
1
Funcotator: Catch true variant problems and report all at end community-request Funcotator
#7097 opened Feb 23, 2021 by alanhoyle
@jonn-smith
"Native" strand sequence output for Funcotator community-request Funcotator
#7057 opened Jan 27, 2021 by jonn-smith
@jonn-smith
Funcotator Data Sources Manifest / Readme for User-created Datasources Funcotator
#6873 opened Oct 8, 2020 by jonn-smith
@jonn-smith
Funcotator Error parsing LineIteratorImpl(SynchronousLineReader) Funcotator
#6758 opened Aug 19, 2020 by ysbioinfo
@jonn-smith
Funcotator Exception: String index out of range Funcotator
#6651 opened Jun 8, 2020 by GATKSupportTeam
@jonn-smith
21
Funcotator IllegalArgumentException Funcotator
#6598 opened May 12, 2020 by GATKSupportTeam
@jonn-smith
4
add check for transcript length before querying UTR sequence
#6546 opened Apr 8, 2020 by shenkers • Review required
@jonn-smith
1
Refactoring of variant context and genotype comparison code
#6417 opened Jan 24, 2020 by KevinCLydon • Review required
@droazen @jonn-smith
1
Funcotator - logic error for large deletions overlapping 5'UTR bug Funcotator
#6345 opened Jan 3, 2020 by shenkers
1 of 2 tasks
@jonn-smith
5
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