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@scottfrazer scottfrazer released this 04 Sep 16:38
· 5271 commits to master since this release
  • Sun GridEngine backend. Specifying -Dbackend.backend=sge will use qsub to launch jobs. See also the filesystem assumptions for using the GridEngine backend.

  • Support for scatter blocks, for example:

    task add_one {
      Int n
      command {
        python -c "print(${n}+1)"
      }
      output {
        Int incremented = read_int(stdout())
      }
    }
    
    workflow test {
      Array[Int] list = [1,2,3,4]
      scatter (x in list) {
        call add_one {input: n=x}
      }
    }
    
  • Localization strategies for SGE/local backends. Instead of copying all files, one can specify hard-link, soft-link, and copy. By default they are tried in the order that they're listed here until one succeeds, though the priority is configurable. See filesystem assumptions for more information.